Results from PredictProtein
for predict_h29244
TOC for file /home/ppuser/server/work/predict_h29244
-
The
following information has been received by the server (TOC)
-
PROSITE
motif search (A Bairoch; P Bucher and K Hofmann) (TOC)
-
SEG
low-complexity regions (J C Wootton & S Federhen) (TOC)
-
ProDom
domain search (E Sonnhammer, Corpet, Gouzy, D Kahn) (TOC)
-
PSI-BLAST
alignment header (TOC)
-
MAXHOM
alignment header (TOC)
-
MAXHOM
alignment (TOC)
-
CYSPRED
prediction(P Fariselli,P Riccobelli & R Casadio) (TOC)
-
PHD
information about accuracy (TOC)
-
PHD
predictions (TOC)
-
Ambivalent
Sequence Predictor(Malin Young, Kent Kirshenbaum, Stefan Highsmith)
(TOC)
-
PROF
predictions (TOC)
-
GLOBE
prediction of globularity (TOC)
END of TOC
BEG of results for file /home/ppuser/server/work/predict_h29244
The following information has been received by the
server
reference predict_h29244 (Dec 10, 2003 17:15:56)
reference pred_h29244 (Dec 10, 2003 17:30:47)
reference pred_h29244 (Dec 10, 2003 09:17:45)
PPhdr from: nurit@mail.ls.huji.ac.il
PPhdr resp: MAIL
PPhdr orig: HTML
PPhdr want: HTML
PPhdr password(###)
prediction of: - default prediction of: - PROFsec PROFacc PROFhtm ProSite SEG ProDom COILS NLS nors
return msf format
ret html
ret store
# default: single protein sequence
ASHLPYIEQGMQLAEQFKQKAIGLLQTATKQAEAAAPVVESKWRTLEAFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQHTLLFNILGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPC
PROSITE motif search (A Bairoch; P Bucher and K Hofmann)
TOP
- BOTTOM
- PROSITE
-------------------------------------------------------------
Pattern-ID: CK2_PHOSPHO_SITE PS00006 PDOC00006
Pattern-DE: Casein kinase II phosphorylation site
Pattern: [ST].{2}[DE]
164 STED
Pattern-ID: MYRISTYL PS00008 PDOC00008
Pattern-DE: N-myristoylation site
Pattern: G[^EDRKHPFYW].{2}[STAGCN][^P]
10 GMQLAE
23 GLLQTA
102 GGWVAA
120 GAGIAG
145 GAGVAG
184 GVVCAA
SEG low-complexity regions (J C Wootton & S
Federhen)
TOP
- BOTTOM
- SEG
prot (#) default: single protein sequence /home/ppuser/server/work/predict_h29244
from: 1 to: 261 prot (#) default: single protein sequence /home/ppuser/server/work/predict_h29244
/home/ppuser/server/work/predict_h29244.segNormGcg Length: 261 11-Jul-99
Check: 2818 .. 1 ASHLPYIEQG MQLAEQFKQK AIGLLQTATK QAEAAAPVVE SKWRTLEAFW
51 AKHMWNFISG IQYLAGLSTL PGNPAIASLM AFTASITSPL TTQHTLLFNI 101 LGGWVxxxxx
xxxxxxxxxx xxxxxxxxxx xxLGKVLVDI xxxxxxxxxx 151 xxxxFKVMSG EMPSTEDLVN LLPAILSPGA
LVVGVVCAAI LRRHVGPGEG 201 AVQWMNRLIA FASRGNHVSP THYVPESDAA ARVTQILSSL TITQLLKRLH
251 QWINEDCSTP C
ProDom domain search (E Sonnhammer, Corpet, Gouzy,
D Kahn)
TOP
- BOTTOM
- ProDom
- MView
Identities computed with respect to: (query) prot
Colored by: consensus/70% and property
HSP processing: ranked
1 [ . . . . : . . . . 1 . . . . : . . . . 2 . . . . : .] 261
prot (#) default: single protein... score P(N) N ASHLPYIEQGMQLAEQFKQKAIGLLQTATKQAEAAAPVVESKWRTLEAFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQHTLLFNILGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPC
1 PD000822 p2000.1 (129) POLG(8) O0980... 314 1.9e-28 1 ASHLPYIEQGMQLAEQFKQKVLGLLQTATKQAETAKPVVQSLDKLFAGGWAAVVGHCHSVIAAAVAAYGASRSPPLAAAASYLMGLGVGGNAQARLASALLLGAAGTALGTPVVGLTMAGAFMGGASV-SPSLVTVLLGAVGGWEGVVNAASLVFDFMAGKL-STEDLWYAIPVLTSPGAGLAGIALGLVL--YSANNSGTTTWLNRLLA---------------------------------------------------
2 PD001312 p2000.1 (61) POLG(8) // PO... 268 1.4e-23 1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLRRLHQWINEDCSTPC
consensus/100% .....................................................................................................................................................................................................................................................................
consensus/90% .....................................................................................................................................................................................................................................................................
consensus/80% .....................................................................................................................................................................................................................................................................
consensus/70% .....................................................................................................................................................................................................................................................................
|
--- ------------------------------------------------------------
---
--- Again: these results were obtained based on the domain data-
--- base collected by Daniel Kahn and his coworkers in Toulouse.
---
--- PLEASE quote:
--- F Corpet, J Gouzy, D Kahn (1998). The ProDom database
--- of protein domain families. Nucleic Ac Res 26:323-326.
---
--- The general WWW page is on:
---- ---------------------------------------
--- http://www.toulouse.inra.fr/prodom.html
---- ---------------------------------------
---
--- For WWW graphic interfaces to PRODOM, in particular for your
--- protein family, follow the following links (each line is ONE
--- single link for your protein!!):
---
http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD000822 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD000822
http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD000822 ==> graphical output of all proteins having domain PD000822
http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD001312 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD001312
http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD001312 ==> graphical output of all proteins having domain PD001312
---
--- NOTE: if you want to use the link, make sure the entire line
--- is pasted as URL into your browser!
---
--- END of PRODOM
--- ------------------------------------------------------------
PSI-BLAST alignment header
--- ------------------------------------------------------------
--- PSI-BLAST multiple sequence alignment
--- ------------------------------------------------------------
---
--- PSI-BLAST ALIGNMENT HEADER: ABBREVIATIONS FOR SUMMARY
--- SEQLENGTH : 261
--- ID : identifier of aligned (homologous) protein
--- LSEQ2 : length of aligned sequence
--- IDE : percentage of pairwise sequence identity
--- SIM : percentage of similarity
--- LALI : number of residues aligned
--- LGAP : number of residues in all indels
--- BSCORE : blast score (bits)
--- BEXPECT : blast expectation value
--- OMIM : OMIM (Online Mendelian Inheritance in Man) ID
--- PROTEIN : one-line description of aligned protein
--- '!' : indicates lower scoring alignment that is combined
--- with the higher scoring adjacent one
---
--- PSI-BLAST ALIGNMENT HEADER: SUMMARY
ID LSEQ2 IDE SIM LALI LGAP BSCORE BEXPECT PROTEIN
trembl|Q9DTE7|Q9DTE7 3010 82 83 261 0 418 e-116 Genome polyprotein.
trembl|Q9J3G4|Q9J3G4 3010 81 83 261 0 418 e-116 Genome polyprotein.
trembl|Q9DTF0|Q9DTF0 3010 82 83 261 0 418 e-116 Genome polyprotein.
trembl|Q807P3|Q807P3 3010 82 83 261 0 418 e-116 Polyprotein.
trembl|Q9J3G6|Q9J3G6 3010 82 83 261 0 417 e-116 Genome polyprotein.
trembl|Q9J3H2|Q9J3H2 3010 83 83 261 0 417 e-116 Genome polyprotein.
trembl|Q9J3H3|Q9J3H3 3010 83 83 261 0 417 e-116 Genome polyprotein.
trembl|Q8QRL8|Q8QRL8 3010 83 83 261 0 417 e-116 Genome polyprotein.
trembl|Q9J3H0|Q9J3H0 3010 81 82 261 0 416 e-115 Genome polyprotein.
swiss|P26663|POLG_HCVBK 3010 82 83 261 0 416 e-115 Genome polyprotein [Conta
trembl|Q9J3F4|Q9J3F4 3008 82 83 261 0 416 e-115 Genome polyprotein.
trembl|Q9QIX3|Q9QIX3 3010 81 83 261 0 416 e-115 Genome polyprotein.
trembl|Q9J3G9|Q9J3G9 3010 82 83 261 0 416 e-115 Genome polyprotein.
trembl|Q9QIY3|Q9QIY3 3010 82 83 261 0 416 e-115 Genome polyprotein.
trembl|Q9QIY4|Q9QIY4 3010 82 83 261 0 416 e-115 Genome polyprotein.
trembl|P90193|P90193 3010 82 83 261 0 416 e-115 Genome polyprotein.
trembl|P90194|P90194 3010 82 83 261 0 416 e-115 Genome polyprotein.
trembl|Q9J3H4|Q9J3H4 3013 81 82 261 0 416 e-115 Genome polyprotein.
trembl|O09796|O09796 3010 81 83 261 0 415 e-115 Genomic RNA (Genome polyp
trembl|Q9DTE0|Q9DTE0 3014 81 83 261 0 415 e-115 Genome polyprotein.
trembl|Q99AU2|Q99AU2 3010 82 83 261 0 415 e-115 Genome polyprotein.
trembl|Q9J3I1|Q9J3I1 3010 81 83 261 0 415 e-115 Genome polyprotein.
trembl|Q9J3G8|Q9J3G8 3010 81 82 261 0 415 e-115 Genome polyprotein.
trembl|Q9J3H7|Q9J3H7 3010 81 82 261 0 415 e-115 Genome polyprotein.
swiss|P26662|POLG_HCVJA 3010 82 83 261 0 415 e-115 Genome polyprotein [Conta
trembl|Q9DTE6|Q9DTE6 3010 82 83 261 0 415 e-115 Genome polyprotein.
trembl|Q9DTE2|Q9DTE2 3010 82 83 261 0 415 e-115 Genome polyprotein.
trembl|Q81989|Q81989 3010 81 83 261 0 415 e-115 E1 and E2/NS1 envelope gl
trembl|Q9QIX4|Q9QIX4 3010 81 82 261 0 415 e-115 Genome polyprotein.
trembl|Q9DTD7|Q9DTD7 3010 81 81 261 0 415 e-115 Genome polyprotein.
trembl|Q8V638|Q8V638 3010 82 83 261 0 415 e-115 Genome polyprotein (Fragm
trembl|Q9DTD6|Q9DTD6 3010 82 83 261 0 414 e-115 Genome polyprotein.
trembl|Q9WMX2|Q9WMX2 3010 84 84 261 0 414 e-115 Genome polyprotein.
trembl|P90192|P90192 3010 82 83 261 0 414 e-115 Genome polyprotein.
trembl|P90195|P90195 3010 82 83 261 0 414 e-115 Genome polyprotein.
trembl|Q9J3G0|Q9J3G0 3010 82 83 261 0 414 e-115 Genome polyprotein.
trembl|Q9DTE5|Q9DTE5 3010 81 83 261 0 414 e-115 Genome polyprotein.
swiss|Q00269|POLG_HCVJT 3010 81 83 261 0 414 e-115 Genome polyprotein [Conta
trembl|Q81541|Q81541 3010 81 83 261 0 414 e-115 Genome polyprotein.
trembl|Q9DTE8|Q9DTE8 3010 82 83 261 0 414 e-115 Genome polyprotein.
trembl|Q9J3G1|Q9J3G1 3010 81 82 261 0 414 e-115 Genome polyprotein.
trembl|Q9QIX6|Q9QIX6 3010 81 83 261 0 414 e-115 Genome polyprotein.
trembl|Q9QIX5|Q9QIX5 3010 81 83 261 0 414 e-115 Genome polyprotein.
trembl|Q9DTE4|Q9DTE4 3010 81 82 261 0 414 e-115 Genome polyprotein.
trembl|Q9J3H9|Q9J3H9 3010 80 82 261 0 414 e-115 Genome polyprotein.
trembl|Q9WIK7|Q9WIK7 3012 82 83 261 0 414 e-115 Genome polyprotein.
trembl|Q9J3H5|Q9J3H5 3010 81 83 261 0 414 e-115 Genome polyprotein.
trembl|Q9QIX8|Q9QIX8 3010 80 81 261 0 414 e-115 Genome polyprotein.
trembl|Q9QIX7|Q9QIX7 3010 80 81 261 0 414 e-115 Genome polyprotein.
trembl|Q9QIY1|Q9QIY1 3010 83 84 261 0 414 e-114 Genome polyprotein.
trembl|Q9QIY7|Q9QIY7 3010 83 84 261 0 414 e-114 Genome polyprotein.
trembl|Q9QIY2|Q9QIY2 3010 83 84 261 0 414 e-114 Genome polyprotein.
trembl|Q9J3H8|Q9J3H8 3010 83 84 261 0 414 e-114 Genome polyprotein.
trembl|Q9QIZ0|Q9QIZ0 3010 83 84 261 0 414 e-114 Genome polyprotein.
trembl|Q9QIY8|Q9QIY8 3010 83 84 261 0 414 e-114 Genome polyprotein.
trembl|Q9QIY9|Q9QIY9 3010 83 84 261 0 414 e-114 Genome polyprotein.
trembl|O92975|O92975 2864 82 83 261 0 413 e-114 Genome polyprotein (Fragm
trembl|O92974|O92974 2864 82 83 261 0 413 e-114 Genome polyprotein (Fragm
trembl|Q9DTD9|Q9DTD9 3010 81 83 261 0 413 e-114 Genome polyprotein.
trembl|Q9WPH5|Q9WPH5 3015 81 82 261 0 413 e-114 Polyprotein.
trembl|Q9QIX2|Q9QIX2 3010 81 83 261 0 413 e-114 Genome polyprotein.
trembl|Q02829|Q02829 3010 81 83 261 0 413 e-114 Polyprotein precursor (Ge
trembl|O92969|O92969 3010 81 83 261 0 413 e-114 Genome polyprotein.
trembl|O92973|O92973 2864 81 83 261 0 413 e-114 Genome polyprotein (Fragm
trembl|Q02828|Q02828 3010 81 83 261 0 413 e-114 Polyprotein precursor (Ge
trembl|Q9WLK8|Q9WLK8 2864 81 83 261 0 413 e-114 Genome polyprotein (Fragm
trembl|O92976|O92976 2864 81 83 261 0 413 e-114 Genome polyprotein (Fragm
trembl|Q9J3G5|Q9J3G5 3010 81 83 261 0 413 e-114 Genome polyprotein.
trembl|Q9QIX1|Q9QIX1 3010 81 83 261 0 413 e-114 Genome polyprotein.
swiss|P26664|POLG_HCV1 3011 73 79 261 0 413 e-114 Genome polyprotein [Conta
trembl|Q9IFE5|Q9IFE5 3011 73 79 261 0 413 e-114 Genome polyprotein.
trembl|Q81756|Q81756 2436 73 79 261 0 413 e-114 Genome polyprotein (Fragm
trembl|P89966|P89966 3010 81 83 261 0 413 e-114 RNA for polyprotein (Geno
trembl|Q81817|Q81817 2284 81 83 261 0 413 e-114 Polyprotein precursor (Ge
trembl|O92970|O92970 3010 81 83 261 0 413 e-114 Genome polyprotein.
trembl|Q9WLL0|Q9WLL0 2864 81 83 261 0 413 e-114 Genome polyprotein (Fragm
trembl|Q9J3G7|Q9J3G7 3010 82 83 261 0 413 e-114 Genome polyprotein.
trembl|Q9DTD8|Q9DTD8 3011 80 82 261 0 413 e-114 Genome polyprotein.
trembl|Q9J3H1|Q9J3H1 3010 80 82 261 0 413 e-114 Genome polyprotein.
trembl|O92972|O92972 3010 81 82 261 0 412 e-114 Genome polyprotein.
trembl|Q9QP06|Q9QP06 3010 83 83 261 0 412 e-114 Genome polyprotein.
trembl|Q68788|Q68788 3010 81 83 261 0 412 e-114 HCV polyprotein (Genome p
trembl|Q9QIX9|Q9QIX9 3013 81 83 261 0 412 e-114 Genome polyprotein.
trembl|Q81757|Q81757 3010 81 83 261 0 412 e-114 Genome polyprotein.
trembl|Q9QIY0|Q9QIY0 3013 81 83 261 0 412 e-114 Genome polyprotein.
trembl|Q9QP61|Q9QP61 3010 82 83 261 0 412 e-114 Genome polyprotein.
trembl|Q9J3H6|Q9J3H6 3010 83 83 261 0 412 e-114 Genome polyprotein.
trembl|Q9DTE3|Q9DTE3 3011 83 83 261 0 412 e-114 Genome polyprotein.
trembl|Q913V3|Q913V3 3010 80 81 261 0 412 e-114 Genome polyprotein.
trembl|Q9WLK9|Q9WLK9 2864 81 82 261 0 411 e-114 Genome polyprotein (Fragm
trembl|O92971|O92971 3010 81 82 261 0 411 e-114 Genome polyprotein.
trembl|Q9QIY5|Q9QIY5 3010 80 82 261 0 411 e-114 Genome polyprotein.
trembl|Q9QIY6|Q9QIY6 3010 80 82 261 0 411 e-114 Genome polyprotein.
trembl|O93016|O93016 3010 82 83 261 0 411 e-114 Genome polyprotein.
trembl|Q9DTE1|Q9DTE1 3010 82 84 261 0 411 e-114 Genome polyprotein.
trembl|Q9J3I0|Q9J3I0 3010 81 82 261 0 411 e-114 Genome polyprotein.
trembl|Q86614|Q86614 3014 80 81 261 0 410 e-114 Genome polyprotein.
trembl|Q68826|Q68826 3010 80 81 261 0 410 e-114 Genome polyprotein.
trembl|P88803|P88803 3010 81 83 261 0 410 e-114 Genome polyprotein.
trembl|O36579|O36579 3011 73 79 261 0 410 e-114 Genome polyprotein.
trembl|O93077|O93077 3010 81 83 261 0 410 e-114 Genome polyprotein.
trembl|Q81760|Q81760 3010 80 81 260 0 410 e-113 Genome polyprotein.
trembl|Q9WIK8|Q9WIK8 3010 81 82 261 0 410 e-113 Genome polyprotein.
trembl|Q9J3F9|Q9J3F9 3010 81 82 261 0 410 e-113 Genome polyprotein.
swiss|P29846|POLG_HCVTW 3010 81 82 261 0 409 e-113 Genome polyprotein [Conta
trembl|Q91AU0|Q91AU0 3010 81 83 261 0 409 e-113 Genome polyprotein.
trembl|Q68833|Q68833 3010 81 82 261 0 409 e-113 Genome polyprotein.
trembl|P90191|P90191 3010 81 83 261 0 409 e-113 Genome polyprotein.
trembl|O36610|O36610 3011 72 78 261 0 409 e-113 Genome polyprotein.
trembl|Q9PWX5|Q9PWX5 3015 72 78 261 0 409 e-113 Genome polyprotein.
trembl|Q9PWU9|Q9PWU9 3015 72 78 261 0 409 e-113 Genome polyprotein.
trembl|O36608|O36608 3011 72 78 261 0 409 e-113 Genome polyprotein.
trembl|Q68949|Q68949 3010 80 82 261 0 409 e-113 JK1-full protein (Genome
trembl|Q68285|Q68285 3010 79 81 261 0 408 e-113 Genome polyprotein.
trembl|Q81825|Q81825 3010 79 81 261 0 408 e-113 mRNA, complete cds (Genom
trembl|Q9J3G2|Q9J3G2 3010 81 83 261 0 408 e-113 Genome polyprotein.
trembl|Q81258|Q81258 3021 65 73 261 0 408 e-113 Genome polyprotein.
trembl|O36609|O36609 3011 72 78 261 0 408 e-113 Genome polyprotein.
trembl|O92933|O92933 3021 65 73 261 0 406 e-112 Genome polyprotein.
trembl|O41809|O41809 1805 79 81 261 0 406 e-112 Genome polyprotein.
trembl|Q03463|Q03463 3011 72 79 261 0 405 e-112 Genome polyprotein.
trembl|Q9ELS8|Q9ELS8 3011 72 78 261 0 405 e-112 Genome polyprotein.
trembl|Q81754|Q81754 3011 70 78 261 0 403 e-111 Genome polyprotein.
trembl|Q913D4|Q913D4 3011 71 78 261 0 403 e-111 Genome polyprotein.
trembl|Q68870|Q68870 3021 65 73 261 0 403 e-111 Genes for core, envelope
trembl|Q68801|Q68801 3019 66 74 261 0 402 e-111 Genome polyprotein.
trembl|Q7T4V8|Q7T4V8 1984 82 83 261 0 402 e-111 NS protein (Fragment).
trembl|Q68344|Q68344 425 80 81 260 1 402 e-111 Polyprotein (Fragment).
trembl|Q9QNC0|Q9QNC0 3013 81 83 261 0 401 e-111 Genome polyprotein.
trembl|Q9J3G3|Q9J3G3 3010 80 81 261 0 400 e-111 Genome polyprotein.
trembl|Q9DIT6|Q9DIT6 3011 71 78 261 0 400 e-111 Genomic RNA for polyprote
trembl|Q9DTE9|Q9DTE9 3010 82 83 261 0 398 e-110 Genome polyprotein.
trembl|Q81495|Q81495 3021 64 72 261 0 397 e-109 Genome polyprotein.
trembl|Q68533|Q68533 3010 80 81 261 0 397 e-109 Genome polyprotein.
trembl|O92531|O92531 3016 63 72 261 0 396 e-109 Genome polyprotein.
swiss|P27958|POLG_HCVH 3011 71 77 261 0 396 e-109 Genome polyprotein [Conta
trembl|O39929|O39929 3008 70 76 261 0 395 e-109 HCV polyprotein (Genome p
trembl|O92529|O92529 3019 64 73 261 0 394 e-109 Genome polyprotein.
trembl|Q68798|Q68798 3022 64 72 261 0 391 e-108 Genome polyprotein.
trembl|Q81487|Q81487 3023 63 75 261 0 390 e-108 Genome polyprotein.
trembl|O92532|O92532 3015 60 71 261 0 390 e-108 Genome polyprotein.
trembl|O92530|O92530 3013 62 72 261 0 390 e-107 Genome polyprotein.
trembl|O91936|O91936 3014 62 73 261 0 389 e-107 Genome polyprotein.
trembl|O39927|O39927 3018 63 73 261 0 387 e-106 Genome polyprotein.
trembl|Q7T7I0|Q7T7I0 3033 62 71 261 0 383 e-105 Polyprotein.
trembl|Q7T7H6|Q7T7H6 3033 62 71 261 0 382 e-105 Polyprotein.
trembl|Q7T7H5|Q7T7H5 3033 62 71 261 0 382 e-105 Polyprotein.
trembl|Q7T7H9|Q7T7H9 3033 62 71 261 0 382 e-105 Polyprotein.
trembl|Q7T7J0|Q7T7J0 3033 62 71 261 0 381 e-105 Polyprotein.
trembl|Q9DHD6|Q9DHD6 3033 62 72 261 0 381 e-105 Genome polyprotein.
trembl|Q7T7I6|Q7T7I6 3033 62 71 261 0 381 e-105 Polyprotein.
trembl|Q7T7I5|Q7T7I5 3033 62 71 261 0 381 e-105 Polyprotein.
trembl|Q7T7J2|Q7T7J2 3033 62 71 261 0 381 e-105 Polyprotein.
trembl|Q7T7J1|Q7T7J1 3033 62 71 261 0 381 e-105 Polyprotein.
trembl|Q7T7I8|Q7T7I8 3033 62 71 261 0 381 e-105 Polyprotein.
trembl|Q7T7I7|Q7T7I7 3033 62 71 261 0 381 e-105 Polyprotein.
trembl|Q7T7I9|Q7T7I9 3033 61 71 261 0 380 e-105 Polyprotein.
swiss|P26660|POLG_HCVJ6 3033 62 71 261 0 380 e-105 Genome polyprotein [Conta
trembl|Q99IB5|Q99IB5 3033 62 71 261 0 380 e-105 Genome polyprotein.
trembl|Q99IB2|Q99IB2 3032 62 71 261 0 380 e-105 Genome polyprotein.
trembl|Q9QF35|Q9QF35 3033 62 71 261 0 380 e-104 Genome polyprotein.
trembl|Q7T7I2|Q7T7I2 3033 62 71 261 0 380 e-104 Polyprotein.
trembl|Q99IB4|Q99IB4 3032 62 71 261 0 379 e-104 Genome polyprotein.
trembl|Q9Q9B0|Q9Q9B0 3033 63 71 261 0 379 e-104 Genome polyprotein.
swiss|P26661|POLG_HCVJ8 3033 62 71 261 0 379 e-104 Genome polyprotein [Conta
trembl|Q9IZA5|Q9IZA5 3033 62 71 261 0 379 e-104 Genome polyprotein.
trembl|Q9Q9A7|Q9Q9A7 3033 62 71 261 0 379 e-104 Genome polyprotein.
trembl|Q9Q9A9|Q9Q9A9 3032 62 71 261 0 379 e-104 Genome polyprotein.
trembl|Q7T7H3|Q7T7H3 3033 62 72 261 0 379 e-104 Polyprotein.
trembl|Q9IZA6|Q9IZA6 3033 62 71 261 0 379 e-104 Genome polyprotein.
trembl|Q9IZA1|Q9IZA1 3033 62 71 261 0 379 e-104 Genome polyprotein.
trembl|Q7T7I3|Q7T7I3 3033 62 71 261 0 379 e-104 Polyprotein.
trembl|Q7T7H8|Q7T7H8 3033 62 72 261 0 379 e-104 Polyprotein.
trembl|Q7T7H7|Q7T7H7 3033 62 72 261 0 379 e-104 Polyprotein.
trembl|Q9Q9A8|Q9Q9A8 3033 62 71 261 0 379 e-104 Genome polyprotein.
trembl|Q7T7I1|Q7T7I1 3033 61 71 261 0 379 e-104 Polyprotein.
trembl|O39928|O39928 3014 60 72 261 0 378 e-104 Genome polyprotein.
trembl|Q7T7H4|Q7T7H4 3033 62 72 261 0 378 e-104 Polyprotein.
trembl|Q99IB7|Q99IB7 3033 62 71 261 0 378 e-104 Genome polyprotein.
trembl|Q7T7I4|Q7T7I4 3033 62 70 261 0 377 e-104 Polyprotein.
trembl|Q99IB8|Q99IB8 3033 61 71 261 0 377 e-104 Genome polyprotein.
trembl|Q9QAX1|Q9QAX1 3033 61 70 261 0 377 e-104 Genome polyprotein.
trembl|Q99IB3|Q99IB3 3033 62 71 261 0 376 e-103 Genome polyprotein.
trembl|Q68749|Q68749 3037 61 72 261 0 376 e-103 Genome polyprotein.
trembl|Q9IZA2|Q9IZA2 3033 62 71 261 0 375 e-103 Genome polyprotein.
trembl|Q99IB6|Q99IB6 3033 62 70 261 0 375 e-103 Genome polyprotein.
trembl|Q9IZA4|Q9IZA4 3033 61 70 261 0 371 e-102 Genome polyprotein.
trembl|Q9IZA3|Q9IZA3 3033 60 69 261 0 365 e-100 Genome polyprotein.
trembl|Q68579|Q68579 197 75 77 197 0 297 8e-80 NS4 protein (Fragment).
trembl|Q68577|Q68577 198 75 77 196 0 297 1e-79 NS4 protein (Fragment).
trembl|Q68585|Q68585 198 68 74 198 0 291 7e-78 NS4 protein (Fragment).
trembl|Q68583|Q68583 198 67 74 197 0 290 1e-77 NS4 protein (Fragment).
trembl|Q68580|Q68580 198 72 76 195 0 288 5e-77 NS4 protein (Fragment).
trembl|Q68586|Q68586 197 68 76 197 0 287 9e-77 NS4 protein (Fragment).
trembl|Q68584|Q68584 191 74 76 191 0 284 7e-76 NS4 protein (Fragment).
trembl|Q81755|Q81755 1186 75 77 197 0 283 2e-75 Polyprotein (Fragment).
trembl|Q68582|Q68582 195 66 73 193 0 280 2e-74 NS4 protein (Fragment).
trembl|Q68581|Q68581 194 63 71 194 0 275 4e-73 NS4 protein (Fragment).
trembl|Q68578|Q68578 188 70 73 188 0 269 2e-71 NS4 protein (Fragment).
trembl|Q9QEW5|Q9QEW5 2864 24 39 216 10 231 1e-59 Genome polyprotein.
trembl|Q69422|Q69422 2864 24 39 216 10 231 1e-59 Polypeptide (Genome polyp
trembl|Q999T0|Q999T0 2864 24 39 216 10 231 1e-59 Genome polyprotein.
trembl|Q8JKE4|Q8JKE4 1925 24 39 216 10 231 1e-59 Non-structural polyprotei
trembl|Q81573|Q81573 271 95 98 87 0 160 2e-38 Nonstructural protein (Fr
trembl|Q02258|Q02258 313 71 83 56 0 102 5e-21 ORF 1 (Fragment).
trembl|Q86668|Q86668 200 98 100 51 0 102 7e-21 Non-structural protein 4
trembl|Q68243|Q68243 138 71 84 53 0 99 7e-20 Nonstructural protein (Fr
trembl|Q68234|Q68234 138 71 84 53 0 99 7e-20 Nonstructural protein (Fr
trembl|Q68226|Q68226 138 71 84 53 0 99 7e-20 Nonstructural protein (Fr
trembl|Q68223|Q68223 138 73 86 53 0 97 2e-19 Nonstructural protein (Fr
trembl|Q81594|Q81594 209 50 66 53 0 97 2e-19 Nonstructural protein 4 (
trembl|Q68224|Q68224 138 71 84 53 0 97 2e-19 Nonstructural protein (Fr
trembl|Q68225|Q68225 138 69 83 53 0 97 2e-19 Nonstructural protein (Fr
trembl|Q68222|Q68222 138 73 84 53 0 96 4e-19 Nonstructural protein (Fr
trembl|Q81595|Q81595 133 50 64 53 0 95 6e-19 Nonstructural protein 4 (
trembl|Q68233|Q68233 138 50 64 53 0 95 6e-19 Nonstructural protein (Fr
trembl|Q68239|Q68239 138 49 62 53 0 95 6e-19 Nonstructural protein (Fr
trembl|Q68236|Q68236 138 69 83 53 0 95 7e-19 Nonstructural protein (Fr
trembl|Q68244|Q68244 138 94 96 53 0 94 1e-18 Nonstructural protein (Fr
trembl|Q68212|Q68212 138 94 96 53 0 94 1e-18 Nonstructural protein (Fr
trembl|Q68227|Q68227 138 94 96 53 0 94 1e-18 Nonstructural protein (Fr
trembl|Q68228|Q68228 138 94 96 53 0 94 1e-18 Nonstructural protein (Fr
trembl|Q68221|Q68221 138 94 96 53 0 94 1e-18 Nonstructural protein (Fr
trembl|Q68205|Q68205 138 94 96 53 0 94 1e-18 Nonstructural protein (Fr
trembl|Q68215|Q68215 138 94 96 53 0 94 1e-18 Nonstructural protein (Fr
trembl|Q68232|Q68232 138 94 96 53 0 94 1e-18 Nonstructural protein (Fr
trembl|Q68238|Q68238 138 94 96 53 0 94 1e-18 Nonstructural protein (Fr
trembl|Q68237|Q68237 138 94 96 53 0 94 1e-18 Nonstructural protein (Fr
trembl|Q68209|Q68209 138 96 98 53 0 93 2e-18 Nonstructural protein (Fr
trembl|Q68241|Q68241 138 49 64 53 0 93 2e-18 Nonstructural protein (Fr
trembl|Q68218|Q68218 138 92 96 53 0 93 3e-18 Nonstructural protein (Fr
trembl|Q68207|Q68207 138 92 96 53 0 93 3e-18 Nonstructural protein (Fr
trembl|Q68208|Q68208 138 92 96 53 0 93 3e-18 Nonstructural protein (Fr
trembl|Q68210|Q68210 138 96 98 53 0 93 3e-18 Nonstructural protein (Fr
trembl|Q68217|Q68217 138 96 98 53 0 93 3e-18 Nonstructural protein (Fr
trembl|Q68230|Q68230 138 96 98 53 0 93 3e-18 Nonstructural protein (Fr
trembl|Q68213|Q68213 138 92 96 53 0 93 4e-18 Nonstructural protein (Fr
trembl|Q68240|Q68240 138 92 96 53 0 92 4e-18 Nonstructural protein (Fr
trembl|Q68229|Q68229 138 98 100 53 0 92 4e-18 Nonstructural protein (Fr
trembl|Q68216|Q68216 138 94 96 53 0 92 5e-18 Nonstructural protein (Fr
trembl|Q68235|Q68235 138 92 96 52 0 92 8e-18 Nonstructural protein (Fr
trembl|Q68206|Q68206 138 92 96 53 0 91 9e-18 Nonstructural protein (Fr
trembl|Q68211|Q68211 138 92 96 53 0 91 9e-18 Nonstructural protein (Fr
trembl|Q68231|Q68231 138 92 94 53 0 90 3e-17 Nonstructural protein (Fr
trembl|O56637|O56637 193 53 66 54 0 89 4e-17 NON-structural protein (F
trembl|Q68242|Q68242 138 96 96 53 0 89 4e-17 Nonstructural protein (Fr
trembl|Q68204|Q68204 138 90 94 52 0 89 5e-17 Nonstructural protein (Fr
trembl|O39902|O39902 90 48 65 49 0 87 2e-16 Non-structural protein 4a
trembl|O39916|O39916 90 48 65 49 0 86 3e-16 Non-structural protein 4a
trembl|O39912|O39912 90 48 65 49 0 86 3e-16 Non-structural protein 4a
trembl|O39913|O39913 90 48 65 49 0 86 4e-16 Non-structural protein 4a
trembl|O39906|O39906 90 48 63 49 0 86 4e-16 Non-structural protein 4a
trembl|O39905|O39905 90 51 65 49 0 85 6e-16 Non-structural protein 4a
trembl|O39908|O39908 90 50 64 48 0 84 1e-15 Non-structural protein 4a
trembl|O39910|O39910 90 50 64 48 0 84 1e-15 Non-structural protein 4a
trembl|O39917|O39917 84 47 64 48 0 84 2e-15 Non-structural protein 4a
trembl|O39904|O39904 90 48 63 47 0 84 2e-15 Non-structural protein 4a
trembl|O39914|O39914 88 91 93 49 0 83 2e-15 Non-structural protein 4a
trembl|Q9PXP5|Q9PXP5 102 91 93 49 0 83 3e-15 NON-structural protein NS
trembl|O39895|O39895 89 93 97 48 0 82 4e-15 Non-structural protein 4a
trembl|O39907|O39907 87 47 63 46 0 82 9e-15 Non-structural protein 4a
trembl|O39898|O39898 88 48 63 47 0 81 1e-14 Non-structural protein 4a
trembl|O39894|O39894 89 46 61 47 0 80 2e-14 Non-structural protein 4a
trembl|O39893|O39893 89 46 61 47 0 80 2e-14 Non-structural protein 4a
trembl|O39909|O39909 90 45 60 48 0 79 5e-14 Non-structural protein 4a
trembl|O39896|O39896 84 45 63 44 0 77 1e-13 Non-structural protein 4a
trembl|Q81242|Q81242 484 35 58 53 0 77 2e-13 Protein (Fragment).
trembl|Q68219|Q68219 138 49 64 53 0 77 2e-13 Nonstructural protein (Fr
trembl|Q68220|Q68220 138 49 64 53 0 77 2e-13 Nonstructural protein (Fr
trembl|Q68214|Q68214 138 47 64 53 0 77 3e-13 Nonstructural protein (Fr
trembl|O39901|O39901 90 42 59 49 0 76 5e-13 Non-structural protein 4a
trembl|O39903|O39903 84 46 62 43 0 75 6e-13 Non-structural protein 4a
trembl|Q81592|Q81592 125 48 63 52 0 74 1e-12 NS4 protein (Fragment).
trembl|O39915|O39915 90 38 59 49 0 70 2e-11 Non-structural protein 4a
trembl|Q9PXP4|Q9PXP4 102 44 61 49 0 70 2e-11 NON-structural protein NS
trembl|O39911|O39911 90 46 61 49 0 70 2e-11 Non-structural protein 4a
trembl|O39900|O39900 83 47 61 41 1 64 1e-09 Non-structural protein 4a
trembl|O39897|O39897 88 46 59 49 0 64 2e-09 Non-structural protein 4a
trembl|Q81579|Q81579 172 96 100 32 0 60 3e-08 Nonstructural protein (Fr
trembl|Q81580|Q81580 172 96 100 32 0 60 3e-08 Nonstructural protein (Fr
trembl|Q81582|Q81582 172 96 100 32 0 60 3e-08 Nonstructural protein (Fr
trembl|Q81584|Q81584 172 96 100 32 0 60 3e-08 Nonstructural protein (Fr
trembl|Q81574|Q81574 172 96 100 32 0 60 3e-08 Nonstructural protein (Fr
trembl|Q81578|Q81578 172 96 100 32 0 60 3e-08 Nonstructural protein (Fr
trembl|Q81581|Q81581 172 96 100 32 0 60 3e-08 Nonstructural protein (Fr
trembl|Q81575|Q81575 172 100 100 32 0 58 7e-08 Nonstructural protein (Fr
trembl|Q81583|Q81583 172 100 100 32 0 58 7e-08 Nonstructural protein (Fr
trembl|O39899|O39899 70 53 68 32 0 58 1e-07 Non-structural protein 4a
trembl|Q81577|Q81577 172 93 96 32 0 57 2e-07 Nonstructural protein (Fr
trembl|Q81586|Q81586 256 46 60 41 0 54 1e-06 NS4 protein (Fragment).
trembl|Q05154|Q05154 205 47 60 38 0 49 4e-05 NS4 (Fragment).
trembl|P87842|P87842 44 96 100 27 0 49 5e-05 NS4 protein (Fragment).
trembl|P87845|P87845 44 96 100 27 0 49 5e-05 NS4 protein (Fragment).
trembl|P87843|P87843 44 96 100 27 0 49 5e-05 NS4 protein (Fragment).
trembl|P87875|P87875 44 96 96 27 0 49 5e-05 NS4 protein (Fragment).
trembl|P90405|P90405 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90411|P90411 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90427|P90427 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90417|P90417 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90410|P90410 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90431|P90431 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90426|P90426 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90423|P90423 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90412|P90412 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90429|P90429 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90407|P90407 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90420|P90420 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90418|P90418 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90414|P90414 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90416|P90416 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90428|P90428 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90413|P90413 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90424|P90424 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90430|P90430 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90406|P90406 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90422|P90422 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90425|P90425 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90421|P90421 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90415|P90415 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90404|P90404 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90409|P90409 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90419|P90419 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|P90408|P90408 44 96 96 27 0 49 6e-05 NS4 protein (Fragment).
trembl|O11845|O11845 41 96 96 27 0 48 7e-05 NS4 protein (Fragment).
trembl|P87872|P87872 44 96 96 27 0 48 8e-05 NS4 protein (Fragment).
trembl|P87871|P87871 44 96 96 27 0 48 8e-05 NS4 protein (Fragment).
trembl|P87870|P87870 44 96 96 27 0 48 8e-05 NS4 protein (Fragment).
trembl|P87867|P87867 44 92 96 27 0 48 8e-05 NS4 protein (Fragment).
trembl|P87864|P87864 44 92 96 27 0 48 8e-05 NS4 protein (Fragment).
trembl|P87849|P87849 44 92 96 27 0 48 8e-05 NS4 protein (Fragment).
trembl|P87876|P87876 44 92 92 27 0 48 1e-04 NS4 protein (Fragment).
trembl|P87877|P87877 44 92 92 27 0 47 2e-04 NS4 protein (Fragment).
trembl|P87879|P87879 44 92 92 27 0 47 2e-04 NS4 protein (Fragment).
trembl|P87880|P87880 44 96 96 26 0 47 2e-04 NS4 protein (Fragment).
trembl|P87884|P87884 44 92 96 27 0 47 2e-04 NS4 protein (Fragment).
trembl|P87844|P87844 44 92 96 27 0 47 2e-04 NS4 protein (Fragment).
trembl|P87874|P87874 44 92 92 27 0 47 2e-04 NS4 protein (Fragment).
trembl|P90366|P90366 44 92 96 27 0 47 2e-04 NS4 protein (Fragment).
trembl|P90367|P90367 44 92 96 27 0 47 2e-04 NS4 protein (Fragment).
trembl|P87857|P87857 44 88 88 27 0 47 2e-04 NS4 protein (Fragment).
trembl|P87848|P87848 44 88 92 27 0 47 3e-04 NS4 protein (Fragment).
trembl|P87865|P87865 44 88 92 27 0 46 4e-04 NS4 protein (Fragment).
trembl|P87881|P87881 44 92 92 27 0 46 4e-04 NS4 protein (Fragment).
trembl|P87883|P87883 44 92 92 27 0 46 4e-04 NS4 protein (Fragment).
trembl|P87854|P87854 44 88 88 27 0 46 5e-04 NS4 protein (Fragment).
trembl|Q9WM98|Q9WM98 2842 32 53 85 4 45 7e-04 Genome polyprotein.
trembl|P87873|P87873 44 88 88 27 0 45 7e-04 NS4 protein (Fragment).
trembl|O36180|O36180 2842 32 53 85 4 45 7e-04 Genome polyprotein.
trembl|Q81588|Q81588 475 47 61 36 0 45 7e-04 NS3-4 protein (Fragment).
trembl|P87863|P87863 44 88 88 27 0 45 8e-04 NS4 protein (Fragment).
trembl|Q9WBT6|Q9WBT6 2942 36 51 75 4 45 8e-04 Genome polyprotein.
trembl|O89252|O89252 2842 31 53 85 4 43 0.002 Genome polyprotein.
trembl|O93074|O93074 2873 31 53 85 4 43 0.002 Genome polyprotein.
trembl|O93075|O93075 2873 31 53 85 4 43 0.002 Genome polyprotein.
trembl|O36179|O36179 2854 31 53 85 4 43 0.002 Genome polyprotein.
trembl|O93070|O93070 2873 31 53 85 4 43 0.002 Genome polyprotein.
trembl|O39980|O39980 2842 31 53 85 4 43 0.002 Genome polyprotein.
trembl|O93073|O93073 2873 31 53 85 4 43 0.002 Genome polyprotein.
trembl|O39981|O39981 2842 31 53 85 4 43 0.002 Genome polyprotein.
trembl|O36176|O36176 2842 31 53 85 4 43 0.002 Genome polyprotein.
trembl|O93069|O93069 2873 31 53 85 4 43 0.002 Genome polyprotein.
trembl|O36178|O36178 2842 31 53 85 4 43 0.002 Genome polyprotein.
trembl|Q9DXH4|Q9DXH4 2842 31 53 85 4 43 0.002 Genome polyprotein.
trembl|Q96899|Q96899 2843 31 53 85 4 43 0.002 Structural and non struct
trembl|O93072|O93072 2873 30 53 85 4 43 0.002 Polyprorein (Genome polyp
trembl|O89251|O89251 2843 31 52 85 4 43 0.003 Genome polyprotein.
trembl|Q9WMB1|Q9WMB1 2842 31 53 85 4 43 0.003 Genome polyprotein.
trembl|O36196|O36196 1435 31 53 85 4 43 0.004 Genome polyprotein (Fragm
trembl|O36194|O36194 2873 31 53 85 4 43 0.004 Genome polyprotein.
trembl|O36181|O36181 2842 31 53 85 4 43 0.004 Genome polyprotein.
trembl|O93197|O93197 2842 30 53 85 4 43 0.004 Genome polyprotein.
trembl|Q69433|Q69433 2910 30 53 85 4 43 0.004 Genome polyprotein.
trembl|Q9WGY8|Q9WGY8 2910 30 53 85 4 43 0.004 Genome polyprotein.
trembl|O09803|O09803 2933 30 53 85 4 43 0.004 Genome polyprotein.
trembl|O90481|O90481 2873 30 53 85 4 43 0.004 Genome polyprotein.
trembl|Q9WDH1|Q9WDH1 2842 30 53 85 4 43 0.004 Genome polyprotein.
trembl|P89967|P89967 2873 30 53 85 4 43 0.004 RNA for polyprotein (Geno
trembl|O36177|O36177 2842 30 53 85 4 43 0.004 Genome polyprotein.
trembl|Q80PW6|Q80PW6 2842 30 53 85 4 43 0.004 Polyprotein.
trembl|O93114|O93114 2873 30 53 85 4 43 0.004 Genome polyprotein.
trembl|O93071|O93071 2873 30 53 85 4 43 0.004 Genome polyprotein.
trembl|O09804|O09804 2842 30 53 85 4 43 0.004 Genome polyprotein.
trembl|O36452|O36452 2842 30 53 85 4 43 0.004 Genome polyprotein.
trembl|P89968|P89968 2870 30 53 85 4 42 0.006 Polyprotein HGVC964 (Geno
trembl|Q69431|Q69431 2873 30 52 85 4 42 0.007 Genome polyprotein.
trembl|O56074|O56074 3005 29 50 89 9 40 0.022 Genome polyprotein.
trembl|Q96901|Q96901 2842 29 52 85 4 40 0.034 Genome polyprotein.
trembl|O41920|O41920 825 27 51 69 3 36 0.37 Nonstructural polyprotein
trembl|O41921|O41921 834 27 51 69 3 36 0.37 Nonstructural polyprotein
trembl|O41923|O41923 833 27 51 69 3 36 0.37 Nonstructural polyprotein
trembl|O41922|O41922 833 28 50 68 3 36 0.47 Nonstructural polyprotein
trembl|O41915|O41915 834 27 51 69 3 36 0.53 Nonstructural polyprotein
trembl|O41917|O41917 833 27 51 69 3 36 0.53 Nonstructural polyprotein
trembl|O41916|O41916 833 27 51 69 3 36 0.53 Nonstructural polyprotein
trembl|P87868|P87868 44 92 92 27 0 35 0.94 NS4 protein (Fragment).
---
--- PSI-BLAST ALIGNMENT
MAXHOM alignment header
--- ------------------------------------------------------------
--- MAXHOM multiple sequence alignment
--- ------------------------------------------------------------
---
--- MAXHOM ALIGNMENT HEADER: ABBREVIATIONS FOR SUMMARY
--- ID : identifier of aligned (homologous) protein
--- STRID : PDB identifier (only for known structures)
--- IDE : percentage of pairwise sequence identity
--- WSIM : percentage of weighted similarity
--- LALI : number of residues aligned
--- NGAP : number of insertions and deletions (indels)
--- LGAP : number of residues in all indels
--- LSEQ2 : length of aligned sequence
--- ACCNUM : SwissProt accession number
--- OMIM : OMIM (Online Mendelian Inheritance in Man) ID
--- NAME : one-line description of aligned protein
---
--- MAXHOM ALIGNMENT HEADER: SUMMARY
ID STRID IDE WSIM LALI NGAP LGAP LSEQ2 ACCNUM NAME
polg_hcvbk 1NS3 98 100 261 0 0 3010 P26663 (P70) (RNA-DIRECTED RNA P
polg_hcvja 98 100 261 0 0 3010 P26662 (P70) (RNA-DIRECTED RNA P
polg_hcvjt 97 99 261 0 0 3010 Q00269 (P70) (RNA-DIRECTED RNA P
polg_hcvtw 96 98 261 0 0 3010 P29846 (P70) (RNA-DIRECTED RNA P
polg_hcv1 87 94 261 0 0 3011 P26664 (P70) (RNA-DIRECTED RNA P
polg_hcvh 1A1V 84 92 261 0 0 3011 P27958 (P70) (RNA-DIRECTED RNA P
polg_hcvj6 74 87 261 0 0 3033 P26660 (P70) (RNA-DIRECTED RNA P
polg_hcvj8 73 87 261 0 0 3033 P26661 (P70) (RNA-DIRECTED RNA P
---
--- MAXHOM ALIGNMENT: IN MSF FORMAT
---
--- Version of database searched for alignment:
--- SWISS-PROT release 41 (02/2003) with 122 564 proteins
---
MAXHOM alignment
TOP
- BOTTOM
- MaxHom
- MView
Identities computed with respect to: (1) predict_h2920
Colored by: consensus/70% and property
1 [ . . . . : . . . . 1 . . . . : . . . . 2 . . . . : .] 261
1 predict_h2920 ASHLPYIEQGMQLAEQFKQKAIGLLQTATKQAEAAAPVVESKWRTLEAFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQHTLLFNILGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPC
2 polg_hcvbk ASHLPYIEQGMQLAEQFKQKALGLLQTATKQAEAAAPVVESKWRALETFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQSTLLFNILGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPC
3 polg_hcvja ASHLPYIEQGMQLAEQFKQKALGLLQTATKQAEAAAPVVESKWRALEVFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQNTLLFNILGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPC
4 polg_hcvjt ASHLPYIEQGMQLAEQFKQKALGLLQTATKQAEAAAPVVESRWRALEAFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQNTLLFNILGGWVAAQLAPPSAASAFVGAGIAGAAIGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEAPSAEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPC
5 polg_hcvtw ASHLPYIEQGMQLAEQFKQKALGLLQTATKQAEAAAPVVESKWRTLEAFWANDMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQSTLLFNILGGWVAAQLAPPGAASAFVGAGIAGAAVGSIGLGKVLVDMVAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVDPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSGLTITQLLRRLHQWINEDCSTPC
6 polg_hcv1 SQHLPYIEQGMMLAEQFKQKALGLLQTASRQAEVIAPAVQTNWQKLETFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTAAVTSPLTTSQTLLFNILGGWVAAQLAAPGAATAFVGAGLAGAAIGSVGLGKVLIDILAGYGAGVAGALVAFKIMSGEVPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTAILSSLTVTQLLRRLHQWISSECTTPC
7 polg_hcvh SQHLPYIEQGMMLAEQFKQKALGLLQTASRHAEVITPAVQTNWQKLEVFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTAAVTSPLTTGQTLLFNILGGWVAAQLAAPGAATAFVGAGLAGAALDSVGLGKVLVDILAGYGAGVAGALVAFKIMSGEVPSTEDLVNLLPAILSPGALAVGVVFASILRRRVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTAILSSLTVTQLLRRLHQWISSECTTPC
8 polg_hcvj6 ASRAALIEEGQRIAEMLKSKIQGLLQQASKQAQDIQPAVQASWPKVEQFWAKHMWNFISGIQYLAGLSTLPGNPAVASMMAFSAALTSPLSTSTTILLNILGGWLASQIAPPAGATGFVVSGLVGAAVGSIGLGKVLVDILAGYGAGISGALVAFKIMSGEKPSMEDVVNLLPGILSPGALVVGVICAAILRRHVGPGEGAVQWMNRLIAFASRGNHVAPTHYVTESDASQRVTQLLGSLTITSLLRRLHNWITEDCPIPC
9 polg_hcvj8 ASKAALIEEGQRMAEMLKSKIQGLLQQATRQAQDIQPAIQSSWPKLEQFWAKHMWNFISGIQYLAGLSTLPGNPAVASMMAFSAALTSPLPTSTTILLNIMGGWLASQIAPPAGATGFVVSGLVGAAVGSIGLGKILVDVLAGYGAGISGALVAFKIMSGEKPTVEDVVNLLPAILSPGALVVGVICAAILRRHVGQGEGAVQWMNRLIAFASRGNHVAPTHYVVESDASQRVTQVLSSLTITSLLRRLHAWITEDCPVPC
consensus/100% up+hshIEpG..hAE.hKpKh.GLLQpAo+pApshtPslpspW.tlE.FWApcMWNFISGIQYLAGLSTLPGNPAlAShMAFoAulTSPLsTtpTlLhNIhGGWlAuQlAsPuuAouFVsuGlsGAAlsSlGLGKlLlDhlAGYGAGluGALVAFKlMSGEhPohEDlVNLLPuILSPGALsVGVlhAuILRR+Vs.GEGAVQWMNRLIAFASRGNHVuPTHYVsESDAutRVTtlLuuLTlTpLL+RLHtWIsp-CshPC
consensus/90% up+hshIEpG..hAE.hKpKh.GLLQpAo+pApshtPslpspW.tlE.FWApcMWNFISGIQYLAGLSTLPGNPAlAShMAFoAulTSPLsTtpTlLhNIhGGWlAuQlAsPuuAouFVsuGlsGAAlsSlGLGKlLlDhlAGYGAGluGALVAFKlMSGEhPohEDlVNLLPuILSPGALsVGVlhAuILRR+Vs.GEGAVQWMNRLIAFASRGNHVuPTHYVsESDAutRVTtlLuuLTlTpLL+RLHtWIsp-CshPC
consensus/80% up+hshIEpG..lAE.hKpKh.GLLQpAo+QApshtPsVpopW.tLE.FWAKHMWNFISGIQYLAGLSTLPGNPAlAShMAFoAulTSPLoTppTlLhNILGGWlAuQlAsPuuAouFVsuGlsGAAlGSlGLGKVLVDlLAGYGAGluGALVAFKlMSGEhPSsEDlVNLLPAILSPGALVVGVlCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVuPTHYVsESDAutRVTtlLSSLTlTpLL+RLHpWIsp-CssPC
consensus/70% ASHLPYIEQGMpLAEQFKQKAlGLLQTAo+QAEshsPsVpopWptLEsFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTAulTSPLTTppTLLFNILGGWVAAQLAPPuAAoAFVGAGlAGAAlGSIGLGKVLVDILAGYGAGVAGALVAFKlMSGEhPSsEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLL+RLHQWIsEDCoTPC
|
CYSPRED prediction(P Fariselli,P Riccobelli &
R Casadio)
TOP
- BOTTOM
- CYSPRED
PREDICTION OF BONDING STATE OF CYSTEINES
Network N. 1 Conservation+ Entropy
N.cys Prob.SS Prob.SH
187 0.010717 0.989284
257 0.585837 0.414170
261 0.922998 0.077001
###################
Network N. 2 Conservation+ Entropy + Charges
N.cys Prob.SS Prob.SH
187 0.009745 0.929050
257 0.631593 0.212123
261 0.896572 0.092042
###################
Network N. 3 Charge
N.cys Prob.SS Prob.SH
187 0.174784 0.825220
257 0.143768 0.856233
###################
Network N. 4 Conservation+ Entropy+Hydrophobicity
N.cys Prob.SS Prob.SH
187 0.004093 0.995907
257 0.719437 0.280565
261 0.915167 0.084837
###################
Network N. 5 Conservation+ Entropy + Charges + Hydrophobicity
N.cys Prob.SS Prob.SH
187 0.011885 0.988115
257 0.602791 0.397206
261 0.916243 0.083753
###################
JURY AMONG THE DIFFERENT NETWORKS
Prob.SS Prob.SH
N.cys BONDED NON-BONDED DISULFIDE
187 0.042 0.946 NO
257 0.537 0.432 YES
261 0.730 0.068 YES
#==============================================#
PHD information about accuracy
****************************************************************************
* *
* PHD: Profile fed neural network systems from HeiDelberg *
* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ *
* *
* Prediction of: *
* secondary structure, by PHDsec *
* solvent accessibility, by PHDacc *
* and helical transmembrane regions, by PHDhtm *
* *
* Author: *
* Burkhard Rost *
* EMBL, 69012 Heidelberg, Germany *
* Internet: Rost@EMBL-Heidelberg.DE *
* *
* All rights reserved. *
* *
****************************************************************************
* *
* The network systems are described in: *
* *
* PHDsec: B Rost & C Sander: JMB, 1993, 232, 584-599. *
* B Rost & C Sander: Proteins, 1994, 19, 55-72. *
* PHDacc: B Rost & C Sander: Proteins, 1994, 20, 216-226. *
* PHDhtm: B Rost et al.: Prot. Science, 1995, 4, 521-533. *
* *
****************************************************************************
PHD predictions
TOP
- BOTTOM
- PHD
PHD predictions for predict_h29244
SYNOPSIS of prediction
-
PHDhtm summary
-
NHTM=5
PHDhtm detected 5 membrane helices for the best model.The
second best model contained 4 helices.
-
TOP=out
PHDhtm predicted the topology out, i.e. the first loop region is out
(Note: this prediction may be problematic when the sequence you sent starts
or ends with a region predicted in a membrane helix!)
-
Reliability of best model=1 (0 is low, 9 is high)
-
Zscore for best model=1.006
-
Difference of positive charges (K+R) inside - outside=7.308 (the higher
the value, the more reliable)
-
Reliability of topology prediction =7 (0 is low, 9 is high)
-
Details of the strength of each predicted membrane helix:
(sorted by strength, strongest first)
| N HTM |
Total score |
Best HTM |
c-N |
| 1 |
0.6540 |
0.8703 |
116 - 134 |
| 2 |
0.7028 |
0.8534 |
173 - 190 |
| 3 |
0.7479 |
0.8272 |
139 - 156 |
| 4 |
0.7868 |
0.7817 |
74 - 91 |
| 5 |
0.7983 |
0.5836 |
52 - 69 |
-
Overview over transmembrane segments:
| Positions |
Segments |
Explain |
| 1- 51 |
o1 |
outside region 1 |
| 52- 69 |
T1 |
?=error 1 |
| 70- 73 |
i1 |
inside region 1 |
| 74- 91 |
T2 |
?=error 2 |
| 92- 115 |
o2 |
outside region 2 |
| 116- 134 |
T3 |
?=error 3 |
| 135- 138 |
i2 |
inside region 2 |
| 139- 156 |
T4 |
?=error 4 |
| 157- 172 |
o3 |
outside region 3 |
| 173- 190 |
T5 |
?=error 5 |
| 191- 261 |
i3 |
inside region 3 |
HEADER information
-
About the alignment used:
-
Residue composition for your protein:
| %A: 15.3 |
%C: 1.1 |
%D: 1.5 |
%E: 3.8 |
%F: 3.1 |
| %G: 9.2 |
%H: 2.7 |
%I: 6.1 |
%K: 3.1 |
%L: 11.5 |
| %M: 2.3 |
%N: 2.7 |
%P: 5.4 |
%Q: 5.0 |
%R: 2.7 |
| %S: 7.3 |
%T: 5.8 |
%V: 7.7 |
%W: 2.3 |
%Y: 1.5 |
-
About the PHD methods used:
-
Please quote:
-
PHD: B Rost (1996) Methods in Enzymology, 266:525-539
-
PHDhtm: B Rost, P Fariselli & R Casadio (1996) Prot Science, 7:1704-1718
-
ABBREVIATIONS used:
| AA : |
amino acid sequence |
| pH_sec: |
'probability' for assigning helix (1=high, 0=low) |
| pL_sec: |
'probability' for assigning neither helix, nor strand (1=high, 0=low) |
| PHD_htm: |
PHD predicted membrane helix: M=helical transmembrane region, blank=non-membrane
PHD = PHD: Profile network prediction HeiDelberg |
| Rel_htm: |
reliability index for PHDhtm prediction (0=low to 9=high)
Note: for the brief presentation strong predictions marked by '*' |
| SUB_htm: |
subset of the PHDhtm prediction, for all residues with an expected
average accuracy > 98% (tables in header)
NOTE: for this subset the following symbols are used:
N: is non-membrane region (for which above ' ' is used)
.: means that no prediction is made for this residue, as the reliability
is: Rel < 7 |
|
|
| PHDrhtm: |
refined PHD prediction: M=helical transmembrane region, blank=non-membrane |
| PiMohtm: |
PHD prediction of membrane topology: T=helical transmembrane region,
i=inside of membrane, o=outside of membrane |
| pT_htm: |
'probability' for assigning transmembrane helix |
| pN_htm: |
'probability' for assigning globular region |
|
|
| phd_skip: |
note: sequence stretches with less than 9 are not predicted, the symbol
'*' is used! |
BODY with predictions
PHD results (brief)
....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....1
AA
ASHLPYIEQGMQLAEQFKQKAIGLLQTATKQAEAAAPVVESKWRTLEAFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQHTLLFNI
PHD_htm
MMMMMMMMMMM MMMMMMMMMMMMMMMMMMMMMMMMMMMMRel_htm
**************************************************** ******* * PiMohtm
oooooooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTTooooooooo
....,....11...,....12...,....13...,....14...,....15...,....16...,....17...,....18...,....19...,....20
AA
LGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEG
PHD_htm
MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM MMMMMMMMMMMMMMMMMMM
Rel_htm
* ***************** ************ *********** ************ ***** PiMohtm
oooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiii
....,....22...,....23...,....24...,....25...,....26...,....27...,....28
AA
AVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPC
PHD_htm
Rel_htm
********************************** **************** PiMohtm
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
PHD results (normal)
....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....1
AA
ASHLPYIEQGMQLAEQFKQKAIGLLQTATKQAEAAAPVVESKWRTLEAFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQHTLLFNI
PHD_htm
MMMMMMMMMMM MMMMMMMMMMMMMMMMMMMMMMMMMMMMRel_htm
9999999999999999999999999999999999999999999999998877640135666654310111121456777777766432223211245667SUB_htm
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN........................MMMMMMM................M
PHDrhtm
MMMMMMMMMMMMMMMMMM MMMMMMMMMMMMMMMMMM PiMohtm
oooooooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTTooooooooo
....,....11...,....12...,....13...,....14...,....15...,....16...,....17...,....18...,....19...,....20
AA
LGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEG
PHD_htm
MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM MMMMMMMMMMMMMMMMMMM
Rel_htm
7666654333345566777777777777777776666667777777777776642145678888888887512466778888888777640455678899SUB_htm
M...............MMMMMMMMMMMMMMMMM......MMMMMMMMMMMM........NNNNNNNNNNN......MMMMMMMMMMMM.......NNNNN
PHDrhtm
MMMMMMMMMMMMMMMMMMM MMMMMMMMMMMMMMMMMM MMMMMMMMMMMMMMMMMM PiMohtm
oooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiii
....,....22...,....23...,....24...,....25...,....26...,....27...,....28
AA
AVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPC
PHD_htm
Rel_htm
9999999877789999999999999999999987642100233467889999999999999SUB_htm
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN...........NNNNNNNNNNNNNNNN PHDrhtm
PiMohtm
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Ambivalent Sequence Predictor(Malin Young, Kent Kirshenbaum,
Stefan Highsmith)
TOP
- BOTTOM
- A
conformational switch prediction program
Ambivalent Sequence Predictor (ASP v1.0) mmy
PROF predictions
TOP
- BOTTOM
- PROF
PROF predictions for query
|
SYNOPSIS of prediction
for query
|
-
PROFsec summary overall your protein
can be classified as:
all-alpha given the following classes:
-
'all-alpha': %H > 45% AND %E < 5%
-
'all-beta': %H < 5% AND %E > 45%
-
'alpha-beta': %H > 30% AND %E > 20%
-
'mixed': all others
-
Predicted secondary structure composition
for your protein:
| sec str type |
H |
E |
L |
| % in protein |
73.18 |
0 |
26.82 |
-
Predicted solvent accessibility composition
(core/surface ratio) for your protein:
Classes used:
-
e: residues exposed with more than 16% of their surface
-
b: all other residues.
-
The subsets are for the fractions of residues predicted at higher levels
of reliability, i.e. accuracy. This set covers 41% of all residues.
| accessib type |
b |
e |
|
sub...: |
accessib type |
b |
e |
| % in protein |
56.32 |
43.68 |
|
...set: |
% in subset |
74.77 |
25.23 |
-
About the alignment used:
| ali_orig |
/home/ppuser/server/work/predict_h29244.hsspPsiFil |
-
Residue composition for your protein:
| %A: 15.3 |
%C: 1.1 |
%D: 1.5 |
%E: 3.8 |
%F: 3.1 |
| %G: 9.2 |
%H: 2.7 |
%I: 6.1 |
%K: 3.1 |
%L: 11.5 |
| %M: 2.3 |
%N: 2.7 |
%P: 5.4 |
%Q: 5.0 |
%R: 2.7 |
| %S: 7.3 |
%T: 5.8 |
%V: 7.7 |
%W: 2.3 |
%Y: 1.5 |
-
About the PROF methods used:
-
Please quote:
-
PROF: B Rost & C Sander (1993) J Mol Biol, 232:584-599
-
PROFhtm: B Rost, P Fariselli & R Casadio (1996) Prot Science, 7:1704-1718
-
ABBREVIATIONS used:
| AA : |
amino acid sequence |
| OBS_sec: |
observed secondary structure: H=helix, E=extended (sheet), blank=other
(loop) |
| PROF_sec: |
PROF predicted secondary structure: H=helix, E=extended (sheet), blank=other
(loop)
PROF = PROF: Profile network prediction HeiDelberg |
| Rel_sec: |
reliability index for PROFsec prediction (0=low to 9=high)
Note: for the brief presentation strong predictions marked by '*' |
| SUB_sec: |
subset of the PROFsec prediction, for all residues with an expected
average accuracy > 82% (tables in header)
NOTE: for this subset the following symbols are used:
L: is loop (for which above ' ' is used)
.: means that no prediction is made for this residue, as the reliability
is: Rel < 5 |
|
|
| pH_sec: |
'probability' for assigning helix (1=high, 0=low) |
| pE_sec: |
'probability' for assigning strand (1=high, 0=low) |
| pL_sec: |
'probability' for assigning neither helix, nor strand (1=high, 0=low) |
| O_2_acc: |
observerd relative solvent accessibility (acc) in 2 states: b = 0-16%,
e = 16-100%. |
| P_2_acc: |
PROF predicted relative solvent accessibility (acc) in 2 states: b
= 0-16%, e = 16-100%. |
| O_3_acc: |
observerd relative solvent accessibility (acc) in 3 states: b = 0-9%,
i = 9-36%, e = 36-100%. |
| P_3_acc: |
PROF predicted relative solvent accessibility (acc) in 3 states: b
= 0-9%, i = 9-36%, e = 36-100%. |
| OBS_acc: |
observed relative solvent accessibility (acc) in 10 states: a value
of n (=0-9) corresponds to a relative acc. of between n*n % and (n+1)*(n+1)
% (e.g. for n=5: 16-25%). |
| PROF_acc: |
PROF predicted relative solvent accessibility (acc) in 10 states: a
value of n (=0-9) corresponds to a relative acc. of between n*n % and (n+1)*(n+1)
% (e.g. for n=5: 16-25%). |
| Rel_acc: |
reliability index for PROFacc prediction (0=low to 9=high)
Note: for the brief presentation strong predictions marked by '*' |
| SUB_acc: |
subset of the PROFacc prediction, for all residues with an expected
average correlation > 0.69 (tables in header)
NOTE: for this subset the following symbols are used:
I: is intermediate (for which above ' ' is used)
.: means that no prediction is made for this residue, as the reliability
is: Rel < 4 |
|
|
|
|
| ali_orig: |
input file |
| prof_fpar: |
name of parameter file, used [w] |
| prof_nnet: |
number of networks used for prediction [d] |
| prof_skip: |
note: sequence stretches with less than 9 are not predicted, the symbol
'*' is used! |
BODY with predictions
for query
|
PROF results (normal)
....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10.1.,....11.1.,....12.1.,....13.1.,....14.1.,....15.1.,....16.1.,....17.1.,....18.1.,....19.1.,....20.1.,....21.1.,....22.1.,....23.1.,....24.1.,....25.1.,....26
AA
ASHLPYIEQGMQLAEQFKQKAIGLLQTATKQAEAAAPVVESKWRTLEAFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQHTLLFNILGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPCOBS_sec
PROF_sec
HHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHH
HHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHH HHHHHHHHH HHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHHHH
HHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHH Rel_sec
987642688898888888877635767656555227714435888888888988878878885623234787788887787663103777741577886654577722378100003467446667764210223467655201024888876533226888997888877654217641347889999987425862226678988998730457556754467100777888888663478898888755530156889SUB_sec
LLLL..HHHHHHHHHHHHHHHH.HHHHHHHHHH..LL....HHHHHHHHHHHHHHHHHHHHHHH.....LLLLHHHHHHHHHH....LLLL..HHHHHHHH.HHHH...LL.......HH..HHHHHH........HHHHH......HHHHHHH....LLLLLLHHHHHHHHH...LL....HHHHHHHHHH..LLL...HHHHHHHHHHH...LLLLLLL..LL...HHHHHHHHHHH..HHHHHHHHHHHH...LLLLL
O_3_acc
bbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbP_3_acc
eee e beeb ebbeebee b ebbeebee beebeeebee be beebbb bbb bbbbbbbbbbb b bbbbbbbbbbbb
b ebeee bbbbbbbbbbbb eeeeb bbbbbbbbbbbbbb eb ebbb bbbbbbbbbbbbbbbb bbeeee
e b ebbe bbb ebbbbbbbbbbbb e eee bb bbbbbbbbbe eeeb e eee ee b ebbeeb b
ebbe b e eee eeeeRel_acc
832222233905176333546331442315335401222222364724052409035646923121000100102595657453102121221223773667616922003240123655776677864300023096368562355665936873022130152629353623110003256999996493322122204145941862421311032031122332116393528322052458558093034135015SUB_acc
e........b.e.be...eib...be...e..ee.........eib.e.b.i.b..bbbbb..............bbbbbbbb.............bb.bbbb.bb......e....bbbbbbbbbbbb.......bb.bbbb..bbbbbb.bbb........i.e.b.e.b.........bbbbbbbbbb.........b.ibbb.bb.b...................e.b.e.b....b.ebbeib.e...e..e..e
PROF results (detail)
....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10.1.,....11.1.,....12.1.,....13.1.,....14.1.,....15.1.,....16.1.,....17.1.,....18.1.,....19.1.,....20.1.,....21.1.,....22.1.,....23.1.,....24.1.,....25.1.,....26
AA
ASHLPYIEQGMQLAEQFKQKAIGLLQTATKQAEAAAPVVESKWRTLEAFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQHTLLFNILGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPCpH_sec
.............. ............. .. .. ... .. .. . .... ....... ....... .......
........ 1.0 pH_sec
................ .... . ..................... .......... ...... ... . .....
. ..... ......... .......... .......... ........... ......... 0.9 pH_sec
................ .......... .. ....................... .......... .............
... ...... ..... ....... .......... ........... ........... ...........
............. 0.8 pH_sec
............................. ........................... ........... ...............
............. ........ .......... ........... ............. . ............
.......................... 0.7 pH_sec
............................. ............................ ............
................ . ............... ......... ........... ........... ..............
............... . ............................ 0.6 pH_sec
............................. ............................ .............
................ .................... ....................... ...........
.............. ............... ............................... 0.5 pH_sec
.............................. .............................. .............
................. .............................................. ............
............... ................ ............................... 0.4 pH_sec
............................... ................................ ..............
.................. ............................................... ............
................ .................. . ................................
0.3 pH_sec
.................................................................. ..............
..................... ................................................
............................... ................... .... ..................................
0.2 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
pE_sec
1.0 pE_sec
0.9 pE_sec
0.8 pE_sec
0.7 pE_sec
0.6 pE_sec
0.5 pE_sec
0.4 pE_sec
. .. . . 0.3 pE_sec
. .... ...... .. ... ... 0.2 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
pL_sec
.. . ..... . . . 1.0 pL_sec
.... .. .... .... .. ...... .. .. . .. . .... 0.9 pL_sec
..... .. .... .... .. ...... ... ... ........ .. ..... 0.8 pL_sec
..... ... ........ ...... ... . ...... ... .... ............ ..... 0.7
pL_sec
..... ... ........ ...... ..... .. . ....... ..... .... ............. .
..... 0.6 pL_sec
..... .... ........ ....... ..... . ... ... ....... ..... .... ................
....... 0.5 pL_sec
...... . ..... . ......... ......... .......... ...... ..... ....... ......
....... ................ . ....... 0.4 pL_sec
...... .. . . ......... ......... ........... .. ........... .. ........
...... .......... ........ ........ ................. .. . ......... 0.3
pL_sec
....... ..... ............... . . ........... . .............. ...... ...................
........... ......... ............. ............. ........... ...................
.... ............ 0.2 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
OBS_acc
100% OBS_acc
81% OBS_acc
64% OBS_acc
49% OBS_acc
36% OBS_acc
25% OBS_acc
16% OBS_acc
9% OBS_acc
4% ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
PROF_acc
.. . .. . .. . .. 100% PROF_acc
... . . ... .. . ... . . .. . .. 81% PROF_acc
... . . . . .. . . . ... . ... . . . . ... .. . .. .. . .. . .. 64% PROF_acc
... . .. . .. .. . .. .. .. ... .. . .. . ... .... . . .... . . . . . ...
. ... . ... .. . .. . . . ... .... 49% PROF_acc
... .. .. . .. ... . .. ... .. ... ... .. .. . . .. . . ... . . .... .
. .. . .... .... . .. . .. ..... . ..... . .. ........ .. .. . . .. . ...
.... 36% PROF_acc
... .. .. . .. ... .. .. ... .. ... ... .. .. . . .. .. . . ..... . ....
. . .. . ......... .. .. . ... ..... . ..... .... ........ .. .. . .. ..
...... .... 25% PROF_acc
...... .. .. .. ... .. .. ... .. ... ... .. .. . . .. .. .. .. ..... .......
. .. .. . . ......... .. .. .. ......... . ..... .............. .. .. .
.. .. ............ 16% PROF_acc
...... .. .. .. ... .. .. ... .. ... ...... .. . . .. ... .. ........ .......
. .. .. . . ......... .. .. . .. ......... . .................... .. ....
.. .. ............ 9% PROF_acc
...... .. .. .. ... .. .. ... .. ... ...... .. . . .. ... .. ........ .......
. .. .. . . ......... .. .. . .. ......... . .................... .. ....
.. .. ............ 4% ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GLOBE prediction of globularity
---
--- GLOBE: prediction of protein globularity
---
--- nexp = 114 (number of predicted exposed residues)
--- nfit = 112 (number of expected exposed residues
--- diff = 2.00 (difference nexp-nfit)
--- =====> your protein appears as compact, as a globular domain
---
---
--- GLOBE: further explanations preliminaryily in:
--- http://www.columbia.edu/~rost/Papers/98globe.html
---
--- END of GLOBE
END of results for file predict_h29244
Quotes for methods
-
PredictProtein: PredicProtein:
B Rost (1996) Methods in Enzymology, 266:525-539
-
Author: B Rost
-
Contact: liu@www.predictprotein.org
-
Url: http://www.predictprotein.org/
-
Version: 1.99.08
-
Description: PredictProtein is the acronym for all prediction programs
run.
-
PROSITE: A Bairoch,
P Bucher & K Hofmann (1997) Nucleic Acids Research, 25:217-221
-
Author: A Bairoch, bairoch@cmu.unige.ch P Bucher & K Hofmann
-
Contact: bairoch@cmu.unige.ch
-
Url: http://www.expasy.ch/prosite/
-
Version: 99.07
-
Description: PROSITE is a database of functional motifs. ScanProsite, finds
all functional motifs in your sequence that are annotated in the ProSite
db.
-
SEG: J C Wootton
& S Federhen (1996) Methods in Enzymology, 266:554-571
-
Author: J C Wootton & S Federhen, wootton@ncbi.nlm.nih.gov
-
Contact: rost@columbia.edu
-
Url: wootton@ncbi.nlm.nih.gov
-
Version: 1994
-
Description: SEG divides sequences into regions of low-, and high-complexity.
Low-complexity regions typically correspond to 'simple sequences' or 'compositionally-biased'
regions.
-
ProDom: ELL Sonnhammer
& D Kahn (1994) Protein Science, 3:482-492
-
Author: LL Sonnhammer; J Gouzy, F Corpet, F Servant, D Kahn, dkahn@zyx.toulouse.inra.fr
-
Contact: dkahn@zyx.toulouse.inra.fr
-
Url: http://protein.toulouse.inra.fr/prodom.html
-
Version: 2000.1
-
Description: ProDom is a database of putative protein domains. The database
is searched with BLAST for domains corresponding to your protein.
-
MaxHom: MaxHom:
C Sander R Schneider (1991) Proteins, 9:56-68
-
Author: C Sander & R Schneider, schneider@lion-ag.de
-
Contact: schneider\@lion-ag.de
-
Version: 1.99.04
-
Description: MaxHom is a dynamic multiple sequence alignment program which
finds similar sequences in a database.
-
MView: MView:
N P Brown, C Leroy & C Sander (1998) Bioinformatics, 14:380-381
-
Author: N Brown, nbrown@nimr.mrc.ac.uk
-
Url: http://mathbio.nimr.mrc.ac.uk/~nbrown/mview/
-
Copyright: Copyright (C) Nigel P. Brown, 1997-1998. All rights reserved.
-
Version: 1.40.2
-
Description: MView is a program converting multiple sequence alignments
into fancy HTML formatted output.
-
PHD: B Rost (1996)
Methods in Enzymology, 266:525-539
-
Author: B Rost
-
Contact: rost@columbia.edu
-
Url: http://www.predictprotein.org/
-
Version: 1.96
-
Description: PHD is a suite of programs predicting 1D structure (secondary
structure, solvent accessibility) from multiple sequence alignments.
-
PHDhtm: B Rost,
P Fariselli & R Casadio (1996) Protein Science, 7:1704-1718
-
Author: B Rost
-
Contact: rost@columbia.edu
-
Url: http://www.predictprotein.org/
-
Version: 1.96
-
Description: PHDhtm predicts the location and topology of transmembrane
helices from multiple sequence alignments.
-
PROF: B Rost (2000)
in submission
-
Author: B Rost
-
Contact: rost@columbia.edu
-
Version: 2000_04
-
Description: PROF is a suite of programs predicting 1D structure (secondary
structure, solvent accessibility) from multiple sequence alignments.
-
PROFsec: B
Rost (2000) in submission
-
Author: B Rost
-
Contact: rost@columbia.edu
-
Url: http://www.predictprotein.org/
-
Version: 2000_04
-
Description: PROFsec predicts secondary structure from multiple sequence
alignments.
-
PROFacc: B
Rost (2000) in submission
-
Author: B Rost
-
Contact: rost@columbia.edu
-
Url: http://www.predictprotein.org/
-
Version: 2000_04
-
Description: PROFacc predicts per residue solvent accessibility from multiple
sequence alignments.
-
GLOBE: B Rost
(1998) unpublished
-
Author: B Rost
-
Contact: rost@columbia.edu
-
Url: http://www.predictprotein.org/
-
Version: 1.98.05
-
Description: GLOBE predicts the globularity of a protein.
-
CYSPRED: Fariselli
P, Riccobelli P & Casadio R (1999) PROTEINS 36:340-346
-
Author: Fariselli P, Riccobelli P, Casadio R
-
Contact: piero@lipid.biocomp.unibo.it
-
Url: http://prion.biocomp.unibo.it/cyspred.html
-
Version: 0
-
Description: CYSPRED finds whether the cys residue in your protein forms
disulfide bridge.
-
A conformational switch prediction
program: Young et al. Protein Science(1999) 8:1752-64.
-
Author: Young M, Kirshenbaum K, Dill KA and Highsmith S.
-
Contact: mmyoung@sandia.gov, kent@cheme.caltech.edu, shighsmith@sf.uop.edu
-
Version: 1.0
-
Description: ASP finds regions that are most likely to behave as switches
in proteins known to exhibit this behavior
