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Results from PredictProtein for predict_h29244

TOC for file /home/ppuser/server/work/predict_h29244

  1. The following information has been received by the server (TOC)
  2. PROSITE motif search (A Bairoch; P Bucher and K Hofmann) (TOC)
  3. SEG low-complexity regions (J C Wootton & S Federhen) (TOC)
  4. ProDom domain search (E Sonnhammer, Corpet, Gouzy, D Kahn) (TOC)
  5. PSI-BLAST alignment header (TOC)
  6. MAXHOM alignment header (TOC)
  7. MAXHOM alignment (TOC)
  8. CYSPRED prediction(P Fariselli,P Riccobelli & R Casadio) (TOC)
  9. PHD information about accuracy (TOC)
  10. PHD predictions (TOC)
  11. Ambivalent Sequence Predictor(Malin Young, Kent Kirshenbaum, Stefan Highsmith) (TOC)
  12. PROF predictions (TOC)
  13. GLOBE prediction of globularity (TOC)


END of TOC
 
 



 
 

BEG of results for file /home/ppuser/server/work/predict_h29244

 

The following information has been received by the server

reference predict_h29244 (Dec 10, 2003 17:15:56)
reference pred_h29244 (Dec 10, 2003 17:30:47)
reference pred_h29244 (Dec 10, 2003 09:17:45)
PPhdr from: nurit@mail.ls.huji.ac.il
PPhdr resp: MAIL
PPhdr orig: HTML
PPhdr want: HTML
PPhdr password(###)
prediction of: - default prediction of: - PROFsec PROFacc PROFhtm ProSite SEG ProDom COILS NLS nors
return msf format
ret html
ret store
# default: single protein sequence
ASHLPYIEQGMQLAEQFKQKAIGLLQTATKQAEAAAPVVESKWRTLEAFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQHTLLFNILGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPC

PROSITE motif search (A Bairoch; P Bucher and K Hofmann)

TOP - BOTTOM - PROSITE
-------------------------------------------------------------
Pattern-ID: CK2_PHOSPHO_SITE PS00006 PDOC00006
Pattern-DE: Casein kinase II phosphorylation site
Pattern:    [ST].{2}[DE]
   164      STED

Pattern-ID: MYRISTYL PS00008 PDOC00008
Pattern-DE: N-myristoylation site
Pattern:    G[^EDRKHPFYW].{2}[STAGCN][^P]
   10       GMQLAE
   23       GLLQTA
   102      GGWVAA
   120      GAGIAG
   145      GAGVAG
   184      GVVCAA



SEG low-complexity regions (J C Wootton & S Federhen)

TOP - BOTTOM - SEG

prot (#) default: single protein sequence /home/ppuser/server/work/predict_h29244 from: 1 to: 261 prot (#) default: single protein sequence /home/ppuser/server/work/predict_h29244 /home/ppuser/server/work/predict_h29244.segNormGcg Length: 261 11-Jul-99 Check: 2818 .. 1 ASHLPYIEQG MQLAEQFKQK AIGLLQTATK QAEAAAPVVE SKWRTLEAFW 51 AKHMWNFISG IQYLAGLSTL PGNPAIASLM AFTASITSPL TTQHTLLFNI 101 LGGWVxxxxx xxxxxxxxxx xxxxxxxxxx xxLGKVLVDI xxxxxxxxxx 151 xxxxFKVMSG EMPSTEDLVN LLPAILSPGA LVVGVVCAAI LRRHVGPGEG 201 AVQWMNRLIA FASRGNHVSP THYVPESDAA ARVTQILSSL TITQLLKRLH 251 QWINEDCSTP C


ProDom domain search (E Sonnhammer, Corpet, Gouzy, D Kahn)

TOP - BOTTOM - ProDom - MView
Identities computed with respect to: (query) prot
Colored by: consensus/70% and property
HSP processing: ranked

                                                                     1 [        .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .] 261
  prot           (#) default: single protein... score      P(N)  N     ASHLPYIEQGMQLAEQFKQKAIGLLQTATKQAEAAAPVVESKWRTLEAFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQHTLLFNILGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPC    
1 PD000822       p2000.1 (129) POLG(8) O0980...   314   1.9e-28  1     ASHLPYIEQGMQLAEQFKQKVLGLLQTATKQAETAKPVVQSLDKLFAGGWAAVVGHCHSVIAAAVAAYGASRSPPLAAAASYLMGLGVGGNAQARLASALLLGAAGTALGTPVVGLTMAGAFMGGASV-SPSLVTVLLGAVGGWEGVVNAASLVFDFMAGKL-STEDLWYAIPVLTSPGAGLAGIALGLVL--YSANNSGTTTWLNRLLA---------------------------------------------------    
2 PD001312       p2000.1 (61) POLG(8)  // PO...   268   1.4e-23  1     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLRRLHQWINEDCSTPC    
  consensus/100%                                                       .....................................................................................................................................................................................................................................................................    
  consensus/90%                                                        .....................................................................................................................................................................................................................................................................    
  consensus/80%                                                        .....................................................................................................................................................................................................................................................................    
  consensus/70%                                                        .....................................................................................................................................................................................................................................................................    
--- ------------------------------------------------------------
--- 
--- Again: these results were obtained based on the domain data-
--- base collected by Daniel Kahn and his coworkers in Toulouse.
--- 
--- PLEASE quote: 
---       F Corpet, J Gouzy, D Kahn (1998).  The ProDom database
---       of protein domain families. Nucleic Ac Res 26:323-326.
--- 
--- The general WWW page is on:
----      ---------------------------------------
---       http://www.toulouse.inra.fr/prodom.html
----      ---------------------------------------
--- 
--- For WWW graphic interfaces to PRODOM, in particular for your
--- protein family, follow the following links (each line is ONE
--- single link for your protein!!):
--- 
http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD000822 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD000822
http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD000822 ==> graphical output of all proteins having domain PD000822
http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD001312 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD001312
http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD001312 ==> graphical output of all proteins having domain PD001312
--- 
--- NOTE: if you want to use the link, make sure the entire line
---       is pasted as URL into your browser!
--- 
--- END of PRODOM
--- ------------------------------------------------------------

PSI-BLAST alignment header

--- ------------------------------------------------------------
--- PSI-BLAST multiple sequence alignment
--- ------------------------------------------------------------
--- 
--- PSI-BLAST ALIGNMENT HEADER: ABBREVIATIONS FOR SUMMARY
--- SEQLENGTH    : 261
--- ID           : identifier of aligned (homologous) protein
--- LSEQ2        : length of aligned sequence
--- IDE          : percentage of pairwise sequence identity
--- SIM          : percentage of similarity
--- LALI         : number of residues aligned
--- LGAP         : number of residues in all indels
--- BSCORE       : blast score (bits)
--- BEXPECT      : blast expectation value
--- OMIM         : OMIM (Online Mendelian Inheritance in Man) ID
--- PROTEIN      : one-line description of aligned protein
--- '!'          : indicates lower scoring alignment that is combined
---                with the higher scoring adjacent one
--- 
--- PSI-BLAST ALIGNMENT HEADER: SUMMARY

ID                          LSEQ2  IDE  SIM LALI LGAP BSCORE BEXPECT PROTEIN                  
trembl|Q9DTE7|Q9DTE7         3010   82   83  261    0    418   e-116 Genome polyprotein.      
trembl|Q9J3G4|Q9J3G4         3010   81   83  261    0    418   e-116 Genome polyprotein.      
trembl|Q9DTF0|Q9DTF0         3010   82   83  261    0    418   e-116 Genome polyprotein.      
trembl|Q807P3|Q807P3         3010   82   83  261    0    418   e-116 Polyprotein.             
trembl|Q9J3G6|Q9J3G6         3010   82   83  261    0    417   e-116 Genome polyprotein.      
trembl|Q9J3H2|Q9J3H2         3010   83   83  261    0    417   e-116 Genome polyprotein.      
trembl|Q9J3H3|Q9J3H3         3010   83   83  261    0    417   e-116 Genome polyprotein.      
trembl|Q8QRL8|Q8QRL8         3010   83   83  261    0    417   e-116 Genome polyprotein.      
trembl|Q9J3H0|Q9J3H0         3010   81   82  261    0    416   e-115 Genome polyprotein.      
swiss|P26663|POLG_HCVBK      3010   82   83  261    0    416   e-115 Genome polyprotein [Conta
trembl|Q9J3F4|Q9J3F4         3008   82   83  261    0    416   e-115 Genome polyprotein.      
trembl|Q9QIX3|Q9QIX3         3010   81   83  261    0    416   e-115 Genome polyprotein.      
trembl|Q9J3G9|Q9J3G9         3010   82   83  261    0    416   e-115 Genome polyprotein.      
trembl|Q9QIY3|Q9QIY3         3010   82   83  261    0    416   e-115 Genome polyprotein.      
trembl|Q9QIY4|Q9QIY4         3010   82   83  261    0    416   e-115 Genome polyprotein.      
trembl|P90193|P90193         3010   82   83  261    0    416   e-115 Genome polyprotein.      
trembl|P90194|P90194         3010   82   83  261    0    416   e-115 Genome polyprotein.      
trembl|Q9J3H4|Q9J3H4         3013   81   82  261    0    416   e-115 Genome polyprotein.      
trembl|O09796|O09796         3010   81   83  261    0    415   e-115 Genomic RNA (Genome polyp
trembl|Q9DTE0|Q9DTE0         3014   81   83  261    0    415   e-115 Genome polyprotein.      
trembl|Q99AU2|Q99AU2         3010   82   83  261    0    415   e-115 Genome polyprotein.      
trembl|Q9J3I1|Q9J3I1         3010   81   83  261    0    415   e-115 Genome polyprotein.      
trembl|Q9J3G8|Q9J3G8         3010   81   82  261    0    415   e-115 Genome polyprotein.      
trembl|Q9J3H7|Q9J3H7         3010   81   82  261    0    415   e-115 Genome polyprotein.      
swiss|P26662|POLG_HCVJA      3010   82   83  261    0    415   e-115 Genome polyprotein [Conta
trembl|Q9DTE6|Q9DTE6         3010   82   83  261    0    415   e-115 Genome polyprotein.      
trembl|Q9DTE2|Q9DTE2         3010   82   83  261    0    415   e-115 Genome polyprotein.      
trembl|Q81989|Q81989         3010   81   83  261    0    415   e-115 E1 and E2/NS1 envelope gl
trembl|Q9QIX4|Q9QIX4         3010   81   82  261    0    415   e-115 Genome polyprotein.      
trembl|Q9DTD7|Q9DTD7         3010   81   81  261    0    415   e-115 Genome polyprotein.      
trembl|Q8V638|Q8V638         3010   82   83  261    0    415   e-115 Genome polyprotein (Fragm
trembl|Q9DTD6|Q9DTD6         3010   82   83  261    0    414   e-115 Genome polyprotein.      
trembl|Q9WMX2|Q9WMX2         3010   84   84  261    0    414   e-115 Genome polyprotein.      
trembl|P90192|P90192         3010   82   83  261    0    414   e-115 Genome polyprotein.      
trembl|P90195|P90195         3010   82   83  261    0    414   e-115 Genome polyprotein.      
trembl|Q9J3G0|Q9J3G0         3010   82   83  261    0    414   e-115 Genome polyprotein.      
trembl|Q9DTE5|Q9DTE5         3010   81   83  261    0    414   e-115 Genome polyprotein.      
swiss|Q00269|POLG_HCVJT      3010   81   83  261    0    414   e-115 Genome polyprotein [Conta
trembl|Q81541|Q81541         3010   81   83  261    0    414   e-115 Genome polyprotein.      
trembl|Q9DTE8|Q9DTE8         3010   82   83  261    0    414   e-115 Genome polyprotein.      
trembl|Q9J3G1|Q9J3G1         3010   81   82  261    0    414   e-115 Genome polyprotein.      
trembl|Q9QIX6|Q9QIX6         3010   81   83  261    0    414   e-115 Genome polyprotein.      
trembl|Q9QIX5|Q9QIX5         3010   81   83  261    0    414   e-115 Genome polyprotein.      
trembl|Q9DTE4|Q9DTE4         3010   81   82  261    0    414   e-115 Genome polyprotein.      
trembl|Q9J3H9|Q9J3H9         3010   80   82  261    0    414   e-115 Genome polyprotein.      
trembl|Q9WIK7|Q9WIK7         3012   82   83  261    0    414   e-115 Genome polyprotein.      
trembl|Q9J3H5|Q9J3H5         3010   81   83  261    0    414   e-115 Genome polyprotein.      
trembl|Q9QIX8|Q9QIX8         3010   80   81  261    0    414   e-115 Genome polyprotein.      
trembl|Q9QIX7|Q9QIX7         3010   80   81  261    0    414   e-115 Genome polyprotein.      
trembl|Q9QIY1|Q9QIY1         3010   83   84  261    0    414   e-114 Genome polyprotein.      
trembl|Q9QIY7|Q9QIY7         3010   83   84  261    0    414   e-114 Genome polyprotein.      
trembl|Q9QIY2|Q9QIY2         3010   83   84  261    0    414   e-114 Genome polyprotein.      
trembl|Q9J3H8|Q9J3H8         3010   83   84  261    0    414   e-114 Genome polyprotein.      
trembl|Q9QIZ0|Q9QIZ0         3010   83   84  261    0    414   e-114 Genome polyprotein.      
trembl|Q9QIY8|Q9QIY8         3010   83   84  261    0    414   e-114 Genome polyprotein.      
trembl|Q9QIY9|Q9QIY9         3010   83   84  261    0    414   e-114 Genome polyprotein.      
trembl|O92975|O92975         2864   82   83  261    0    413   e-114 Genome polyprotein (Fragm
trembl|O92974|O92974         2864   82   83  261    0    413   e-114 Genome polyprotein (Fragm
trembl|Q9DTD9|Q9DTD9         3010   81   83  261    0    413   e-114 Genome polyprotein.      
trembl|Q9WPH5|Q9WPH5         3015   81   82  261    0    413   e-114 Polyprotein.             
trembl|Q9QIX2|Q9QIX2         3010   81   83  261    0    413   e-114 Genome polyprotein.      
trembl|Q02829|Q02829         3010   81   83  261    0    413   e-114 Polyprotein precursor (Ge
trembl|O92969|O92969         3010   81   83  261    0    413   e-114 Genome polyprotein.      
trembl|O92973|O92973         2864   81   83  261    0    413   e-114 Genome polyprotein (Fragm
trembl|Q02828|Q02828         3010   81   83  261    0    413   e-114 Polyprotein precursor (Ge
trembl|Q9WLK8|Q9WLK8         2864   81   83  261    0    413   e-114 Genome polyprotein (Fragm
trembl|O92976|O92976         2864   81   83  261    0    413   e-114 Genome polyprotein (Fragm
trembl|Q9J3G5|Q9J3G5         3010   81   83  261    0    413   e-114 Genome polyprotein.      
trembl|Q9QIX1|Q9QIX1         3010   81   83  261    0    413   e-114 Genome polyprotein.      
swiss|P26664|POLG_HCV1       3011   73   79  261    0    413   e-114 Genome polyprotein [Conta
trembl|Q9IFE5|Q9IFE5         3011   73   79  261    0    413   e-114 Genome polyprotein.      
trembl|Q81756|Q81756         2436   73   79  261    0    413   e-114 Genome polyprotein (Fragm
trembl|P89966|P89966         3010   81   83  261    0    413   e-114 RNA for polyprotein (Geno
trembl|Q81817|Q81817         2284   81   83  261    0    413   e-114 Polyprotein precursor (Ge
trembl|O92970|O92970         3010   81   83  261    0    413   e-114 Genome polyprotein.      
trembl|Q9WLL0|Q9WLL0         2864   81   83  261    0    413   e-114 Genome polyprotein (Fragm
trembl|Q9J3G7|Q9J3G7         3010   82   83  261    0    413   e-114 Genome polyprotein.      
trembl|Q9DTD8|Q9DTD8         3011   80   82  261    0    413   e-114 Genome polyprotein.      
trembl|Q9J3H1|Q9J3H1         3010   80   82  261    0    413   e-114 Genome polyprotein.      
trembl|O92972|O92972         3010   81   82  261    0    412   e-114 Genome polyprotein.      
trembl|Q9QP06|Q9QP06         3010   83   83  261    0    412   e-114 Genome polyprotein.      
trembl|Q68788|Q68788         3010   81   83  261    0    412   e-114 HCV polyprotein (Genome p
trembl|Q9QIX9|Q9QIX9         3013   81   83  261    0    412   e-114 Genome polyprotein.      
trembl|Q81757|Q81757         3010   81   83  261    0    412   e-114 Genome polyprotein.      
trembl|Q9QIY0|Q9QIY0         3013   81   83  261    0    412   e-114 Genome polyprotein.      
trembl|Q9QP61|Q9QP61         3010   82   83  261    0    412   e-114 Genome polyprotein.      
trembl|Q9J3H6|Q9J3H6         3010   83   83  261    0    412   e-114 Genome polyprotein.      
trembl|Q9DTE3|Q9DTE3         3011   83   83  261    0    412   e-114 Genome polyprotein.      
trembl|Q913V3|Q913V3         3010   80   81  261    0    412   e-114 Genome polyprotein.      
trembl|Q9WLK9|Q9WLK9         2864   81   82  261    0    411   e-114 Genome polyprotein (Fragm
trembl|O92971|O92971         3010   81   82  261    0    411   e-114 Genome polyprotein.      
trembl|Q9QIY5|Q9QIY5         3010   80   82  261    0    411   e-114 Genome polyprotein.      
trembl|Q9QIY6|Q9QIY6         3010   80   82  261    0    411   e-114 Genome polyprotein.      
trembl|O93016|O93016         3010   82   83  261    0    411   e-114 Genome polyprotein.      
trembl|Q9DTE1|Q9DTE1         3010   82   84  261    0    411   e-114 Genome polyprotein.      
trembl|Q9J3I0|Q9J3I0         3010   81   82  261    0    411   e-114 Genome polyprotein.      
trembl|Q86614|Q86614         3014   80   81  261    0    410   e-114 Genome polyprotein.      
trembl|Q68826|Q68826         3010   80   81  261    0    410   e-114 Genome polyprotein.      
trembl|P88803|P88803         3010   81   83  261    0    410   e-114 Genome polyprotein.      
trembl|O36579|O36579         3011   73   79  261    0    410   e-114 Genome polyprotein.      
trembl|O93077|O93077         3010   81   83  261    0    410   e-114 Genome polyprotein.      
trembl|Q81760|Q81760         3010   80   81  260    0    410   e-113 Genome polyprotein.      
trembl|Q9WIK8|Q9WIK8         3010   81   82  261    0    410   e-113 Genome polyprotein.      
trembl|Q9J3F9|Q9J3F9         3010   81   82  261    0    410   e-113 Genome polyprotein.      
swiss|P29846|POLG_HCVTW      3010   81   82  261    0    409   e-113 Genome polyprotein [Conta
trembl|Q91AU0|Q91AU0         3010   81   83  261    0    409   e-113 Genome polyprotein.      
trembl|Q68833|Q68833         3010   81   82  261    0    409   e-113 Genome polyprotein.      
trembl|P90191|P90191         3010   81   83  261    0    409   e-113 Genome polyprotein.      
trembl|O36610|O36610         3011   72   78  261    0    409   e-113 Genome polyprotein.      
trembl|Q9PWX5|Q9PWX5         3015   72   78  261    0    409   e-113 Genome polyprotein.      
trembl|Q9PWU9|Q9PWU9         3015   72   78  261    0    409   e-113 Genome polyprotein.      
trembl|O36608|O36608         3011   72   78  261    0    409   e-113 Genome polyprotein.      
trembl|Q68949|Q68949         3010   80   82  261    0    409   e-113 JK1-full protein (Genome 
trembl|Q68285|Q68285         3010   79   81  261    0    408   e-113 Genome polyprotein.      
trembl|Q81825|Q81825         3010   79   81  261    0    408   e-113 mRNA, complete cds (Genom
trembl|Q9J3G2|Q9J3G2         3010   81   83  261    0    408   e-113 Genome polyprotein.      
trembl|Q81258|Q81258         3021   65   73  261    0    408   e-113 Genome polyprotein.      
trembl|O36609|O36609         3011   72   78  261    0    408   e-113 Genome polyprotein.      
trembl|O92933|O92933         3021   65   73  261    0    406   e-112 Genome polyprotein.      
trembl|O41809|O41809         1805   79   81  261    0    406   e-112 Genome polyprotein.      
trembl|Q03463|Q03463         3011   72   79  261    0    405   e-112 Genome polyprotein.      
trembl|Q9ELS8|Q9ELS8         3011   72   78  261    0    405   e-112 Genome polyprotein.      
trembl|Q81754|Q81754         3011   70   78  261    0    403   e-111 Genome polyprotein.      
trembl|Q913D4|Q913D4         3011   71   78  261    0    403   e-111 Genome polyprotein.      
trembl|Q68870|Q68870         3021   65   73  261    0    403   e-111 Genes for core, envelope 
trembl|Q68801|Q68801         3019   66   74  261    0    402   e-111 Genome polyprotein.      
trembl|Q7T4V8|Q7T4V8         1984   82   83  261    0    402   e-111 NS protein (Fragment).   
trembl|Q68344|Q68344          425   80   81  260    1    402   e-111 Polyprotein (Fragment).  
trembl|Q9QNC0|Q9QNC0         3013   81   83  261    0    401   e-111 Genome polyprotein.      
trembl|Q9J3G3|Q9J3G3         3010   80   81  261    0    400   e-111 Genome polyprotein.      
trembl|Q9DIT6|Q9DIT6         3011   71   78  261    0    400   e-111 Genomic RNA for polyprote
trembl|Q9DTE9|Q9DTE9         3010   82   83  261    0    398   e-110 Genome polyprotein.      
trembl|Q81495|Q81495         3021   64   72  261    0    397   e-109 Genome polyprotein.      
trembl|Q68533|Q68533         3010   80   81  261    0    397   e-109 Genome polyprotein.      
trembl|O92531|O92531         3016   63   72  261    0    396   e-109 Genome polyprotein.      
swiss|P27958|POLG_HCVH       3011   71   77  261    0    396   e-109 Genome polyprotein [Conta
trembl|O39929|O39929         3008   70   76  261    0    395   e-109 HCV polyprotein (Genome p
trembl|O92529|O92529         3019   64   73  261    0    394   e-109 Genome polyprotein.      
trembl|Q68798|Q68798         3022   64   72  261    0    391   e-108 Genome polyprotein.      
trembl|Q81487|Q81487         3023   63   75  261    0    390   e-108 Genome polyprotein.      
trembl|O92532|O92532         3015   60   71  261    0    390   e-108 Genome polyprotein.      
trembl|O92530|O92530         3013   62   72  261    0    390   e-107 Genome polyprotein.      
trembl|O91936|O91936         3014   62   73  261    0    389   e-107 Genome polyprotein.      
trembl|O39927|O39927         3018   63   73  261    0    387   e-106 Genome polyprotein.      
trembl|Q7T7I0|Q7T7I0         3033   62   71  261    0    383   e-105 Polyprotein.             
trembl|Q7T7H6|Q7T7H6         3033   62   71  261    0    382   e-105 Polyprotein.             
trembl|Q7T7H5|Q7T7H5         3033   62   71  261    0    382   e-105 Polyprotein.             
trembl|Q7T7H9|Q7T7H9         3033   62   71  261    0    382   e-105 Polyprotein.             
trembl|Q7T7J0|Q7T7J0         3033   62   71  261    0    381   e-105 Polyprotein.             
trembl|Q9DHD6|Q9DHD6         3033   62   72  261    0    381   e-105 Genome polyprotein.      
trembl|Q7T7I6|Q7T7I6         3033   62   71  261    0    381   e-105 Polyprotein.             
trembl|Q7T7I5|Q7T7I5         3033   62   71  261    0    381   e-105 Polyprotein.             
trembl|Q7T7J2|Q7T7J2         3033   62   71  261    0    381   e-105 Polyprotein.             
trembl|Q7T7J1|Q7T7J1         3033   62   71  261    0    381   e-105 Polyprotein.             
trembl|Q7T7I8|Q7T7I8         3033   62   71  261    0    381   e-105 Polyprotein.             
trembl|Q7T7I7|Q7T7I7         3033   62   71  261    0    381   e-105 Polyprotein.             
trembl|Q7T7I9|Q7T7I9         3033   61   71  261    0    380   e-105 Polyprotein.             
swiss|P26660|POLG_HCVJ6      3033   62   71  261    0    380   e-105 Genome polyprotein [Conta
trembl|Q99IB5|Q99IB5         3033   62   71  261    0    380   e-105 Genome polyprotein.      
trembl|Q99IB2|Q99IB2         3032   62   71  261    0    380   e-105 Genome polyprotein.      
trembl|Q9QF35|Q9QF35         3033   62   71  261    0    380   e-104 Genome polyprotein.      
trembl|Q7T7I2|Q7T7I2         3033   62   71  261    0    380   e-104 Polyprotein.             
trembl|Q99IB4|Q99IB4         3032   62   71  261    0    379   e-104 Genome polyprotein.      
trembl|Q9Q9B0|Q9Q9B0         3033   63   71  261    0    379   e-104 Genome polyprotein.      
swiss|P26661|POLG_HCVJ8      3033   62   71  261    0    379   e-104 Genome polyprotein [Conta
trembl|Q9IZA5|Q9IZA5         3033   62   71  261    0    379   e-104 Genome polyprotein.      
trembl|Q9Q9A7|Q9Q9A7         3033   62   71  261    0    379   e-104 Genome polyprotein.      
trembl|Q9Q9A9|Q9Q9A9         3032   62   71  261    0    379   e-104 Genome polyprotein.      
trembl|Q7T7H3|Q7T7H3         3033   62   72  261    0    379   e-104 Polyprotein.             
trembl|Q9IZA6|Q9IZA6         3033   62   71  261    0    379   e-104 Genome polyprotein.      
trembl|Q9IZA1|Q9IZA1         3033   62   71  261    0    379   e-104 Genome polyprotein.      
trembl|Q7T7I3|Q7T7I3         3033   62   71  261    0    379   e-104 Polyprotein.             
trembl|Q7T7H8|Q7T7H8         3033   62   72  261    0    379   e-104 Polyprotein.             
trembl|Q7T7H7|Q7T7H7         3033   62   72  261    0    379   e-104 Polyprotein.             
trembl|Q9Q9A8|Q9Q9A8         3033   62   71  261    0    379   e-104 Genome polyprotein.      
trembl|Q7T7I1|Q7T7I1         3033   61   71  261    0    379   e-104 Polyprotein.             
trembl|O39928|O39928         3014   60   72  261    0    378   e-104 Genome polyprotein.      
trembl|Q7T7H4|Q7T7H4         3033   62   72  261    0    378   e-104 Polyprotein.             
trembl|Q99IB7|Q99IB7         3033   62   71  261    0    378   e-104 Genome polyprotein.      
trembl|Q7T7I4|Q7T7I4         3033   62   70  261    0    377   e-104 Polyprotein.             
trembl|Q99IB8|Q99IB8         3033   61   71  261    0    377   e-104 Genome polyprotein.      
trembl|Q9QAX1|Q9QAX1         3033   61   70  261    0    377   e-104 Genome polyprotein.      
trembl|Q99IB3|Q99IB3         3033   62   71  261    0    376   e-103 Genome polyprotein.      
trembl|Q68749|Q68749         3037   61   72  261    0    376   e-103 Genome polyprotein.      
trembl|Q9IZA2|Q9IZA2         3033   62   71  261    0    375   e-103 Genome polyprotein.      
trembl|Q99IB6|Q99IB6         3033   62   70  261    0    375   e-103 Genome polyprotein.      
trembl|Q9IZA4|Q9IZA4         3033   61   70  261    0    371   e-102 Genome polyprotein.      
trembl|Q9IZA3|Q9IZA3         3033   60   69  261    0    365   e-100 Genome polyprotein.      
trembl|Q68579|Q68579          197   75   77  197    0    297   8e-80 NS4 protein (Fragment).  
trembl|Q68577|Q68577          198   75   77  196    0    297   1e-79 NS4 protein (Fragment).  
trembl|Q68585|Q68585          198   68   74  198    0    291   7e-78 NS4 protein (Fragment).  
trembl|Q68583|Q68583          198   67   74  197    0    290   1e-77 NS4 protein (Fragment).  
trembl|Q68580|Q68580          198   72   76  195    0    288   5e-77 NS4 protein (Fragment).  
trembl|Q68586|Q68586          197   68   76  197    0    287   9e-77 NS4 protein (Fragment).  
trembl|Q68584|Q68584          191   74   76  191    0    284   7e-76 NS4 protein (Fragment).  
trembl|Q81755|Q81755         1186   75   77  197    0    283   2e-75 Polyprotein (Fragment).  
trembl|Q68582|Q68582          195   66   73  193    0    280   2e-74 NS4 protein (Fragment).  
trembl|Q68581|Q68581          194   63   71  194    0    275   4e-73 NS4 protein (Fragment).  
trembl|Q68578|Q68578          188   70   73  188    0    269   2e-71 NS4 protein (Fragment).  
trembl|Q9QEW5|Q9QEW5         2864   24   39  216   10    231   1e-59 Genome polyprotein.      
trembl|Q69422|Q69422         2864   24   39  216   10    231   1e-59 Polypeptide (Genome polyp
trembl|Q999T0|Q999T0         2864   24   39  216   10    231   1e-59 Genome polyprotein.      
trembl|Q8JKE4|Q8JKE4         1925   24   39  216   10    231   1e-59 Non-structural polyprotei
trembl|Q81573|Q81573          271   95   98   87    0    160   2e-38 Nonstructural protein (Fr
trembl|Q02258|Q02258          313   71   83   56    0    102   5e-21 ORF 1 (Fragment).        
trembl|Q86668|Q86668          200   98  100   51    0    102   7e-21 Non-structural protein 4 
trembl|Q68243|Q68243          138   71   84   53    0     99   7e-20 Nonstructural protein (Fr
trembl|Q68234|Q68234          138   71   84   53    0     99   7e-20 Nonstructural protein (Fr
trembl|Q68226|Q68226          138   71   84   53    0     99   7e-20 Nonstructural protein (Fr
trembl|Q68223|Q68223          138   73   86   53    0     97   2e-19 Nonstructural protein (Fr
trembl|Q81594|Q81594          209   50   66   53    0     97   2e-19 Nonstructural protein 4 (
trembl|Q68224|Q68224          138   71   84   53    0     97   2e-19 Nonstructural protein (Fr
trembl|Q68225|Q68225          138   69   83   53    0     97   2e-19 Nonstructural protein (Fr
trembl|Q68222|Q68222          138   73   84   53    0     96   4e-19 Nonstructural protein (Fr
trembl|Q81595|Q81595          133   50   64   53    0     95   6e-19 Nonstructural protein 4 (
trembl|Q68233|Q68233          138   50   64   53    0     95   6e-19 Nonstructural protein (Fr
trembl|Q68239|Q68239          138   49   62   53    0     95   6e-19 Nonstructural protein (Fr
trembl|Q68236|Q68236          138   69   83   53    0     95   7e-19 Nonstructural protein (Fr
trembl|Q68244|Q68244          138   94   96   53    0     94   1e-18 Nonstructural protein (Fr
trembl|Q68212|Q68212          138   94   96   53    0     94   1e-18 Nonstructural protein (Fr
trembl|Q68227|Q68227          138   94   96   53    0     94   1e-18 Nonstructural protein (Fr
trembl|Q68228|Q68228          138   94   96   53    0     94   1e-18 Nonstructural protein (Fr
trembl|Q68221|Q68221          138   94   96   53    0     94   1e-18 Nonstructural protein (Fr
trembl|Q68205|Q68205          138   94   96   53    0     94   1e-18 Nonstructural protein (Fr
trembl|Q68215|Q68215          138   94   96   53    0     94   1e-18 Nonstructural protein (Fr
trembl|Q68232|Q68232          138   94   96   53    0     94   1e-18 Nonstructural protein (Fr
trembl|Q68238|Q68238          138   94   96   53    0     94   1e-18 Nonstructural protein (Fr
trembl|Q68237|Q68237          138   94   96   53    0     94   1e-18 Nonstructural protein (Fr
trembl|Q68209|Q68209          138   96   98   53    0     93   2e-18 Nonstructural protein (Fr
trembl|Q68241|Q68241          138   49   64   53    0     93   2e-18 Nonstructural protein (Fr
trembl|Q68218|Q68218          138   92   96   53    0     93   3e-18 Nonstructural protein (Fr
trembl|Q68207|Q68207          138   92   96   53    0     93   3e-18 Nonstructural protein (Fr
trembl|Q68208|Q68208          138   92   96   53    0     93   3e-18 Nonstructural protein (Fr
trembl|Q68210|Q68210          138   96   98   53    0     93   3e-18 Nonstructural protein (Fr
trembl|Q68217|Q68217          138   96   98   53    0     93   3e-18 Nonstructural protein (Fr
trembl|Q68230|Q68230          138   96   98   53    0     93   3e-18 Nonstructural protein (Fr
trembl|Q68213|Q68213          138   92   96   53    0     93   4e-18 Nonstructural protein (Fr
trembl|Q68240|Q68240          138   92   96   53    0     92   4e-18 Nonstructural protein (Fr
trembl|Q68229|Q68229          138   98  100   53    0     92   4e-18 Nonstructural protein (Fr
trembl|Q68216|Q68216          138   94   96   53    0     92   5e-18 Nonstructural protein (Fr
trembl|Q68235|Q68235          138   92   96   52    0     92   8e-18 Nonstructural protein (Fr
trembl|Q68206|Q68206          138   92   96   53    0     91   9e-18 Nonstructural protein (Fr
trembl|Q68211|Q68211          138   92   96   53    0     91   9e-18 Nonstructural protein (Fr
trembl|Q68231|Q68231          138   92   94   53    0     90   3e-17 Nonstructural protein (Fr
trembl|O56637|O56637          193   53   66   54    0     89   4e-17 NON-structural protein (F
trembl|Q68242|Q68242          138   96   96   53    0     89   4e-17 Nonstructural protein (Fr
trembl|Q68204|Q68204          138   90   94   52    0     89   5e-17 Nonstructural protein (Fr
trembl|O39902|O39902           90   48   65   49    0     87   2e-16 Non-structural protein 4a
trembl|O39916|O39916           90   48   65   49    0     86   3e-16 Non-structural protein 4a
trembl|O39912|O39912           90   48   65   49    0     86   3e-16 Non-structural protein 4a
trembl|O39913|O39913           90   48   65   49    0     86   4e-16 Non-structural protein 4a
trembl|O39906|O39906           90   48   63   49    0     86   4e-16 Non-structural protein 4a
trembl|O39905|O39905           90   51   65   49    0     85   6e-16 Non-structural protein 4a
trembl|O39908|O39908           90   50   64   48    0     84   1e-15 Non-structural protein 4a
trembl|O39910|O39910           90   50   64   48    0     84   1e-15 Non-structural protein 4a
trembl|O39917|O39917           84   47   64   48    0     84   2e-15 Non-structural protein 4a
trembl|O39904|O39904           90   48   63   47    0     84   2e-15 Non-structural protein 4a
trembl|O39914|O39914           88   91   93   49    0     83   2e-15 Non-structural protein 4a
trembl|Q9PXP5|Q9PXP5          102   91   93   49    0     83   3e-15 NON-structural protein NS
trembl|O39895|O39895           89   93   97   48    0     82   4e-15 Non-structural protein 4a
trembl|O39907|O39907           87   47   63   46    0     82   9e-15 Non-structural protein 4a
trembl|O39898|O39898           88   48   63   47    0     81   1e-14 Non-structural protein 4a
trembl|O39894|O39894           89   46   61   47    0     80   2e-14 Non-structural protein 4a
trembl|O39893|O39893           89   46   61   47    0     80   2e-14 Non-structural protein 4a
trembl|O39909|O39909           90   45   60   48    0     79   5e-14 Non-structural protein 4a
trembl|O39896|O39896           84   45   63   44    0     77   1e-13 Non-structural protein 4a
trembl|Q81242|Q81242          484   35   58   53    0     77   2e-13 Protein (Fragment).      
trembl|Q68219|Q68219          138   49   64   53    0     77   2e-13 Nonstructural protein (Fr
trembl|Q68220|Q68220          138   49   64   53    0     77   2e-13 Nonstructural protein (Fr
trembl|Q68214|Q68214          138   47   64   53    0     77   3e-13 Nonstructural protein (Fr
trembl|O39901|O39901           90   42   59   49    0     76   5e-13 Non-structural protein 4a
trembl|O39903|O39903           84   46   62   43    0     75   6e-13 Non-structural protein 4a
trembl|Q81592|Q81592          125   48   63   52    0     74   1e-12 NS4 protein (Fragment).  
trembl|O39915|O39915           90   38   59   49    0     70   2e-11 Non-structural protein 4a
trembl|Q9PXP4|Q9PXP4          102   44   61   49    0     70   2e-11 NON-structural protein NS
trembl|O39911|O39911           90   46   61   49    0     70   2e-11 Non-structural protein 4a
trembl|O39900|O39900           83   47   61   41    1     64   1e-09 Non-structural protein 4a
trembl|O39897|O39897           88   46   59   49    0     64   2e-09 Non-structural protein 4a
trembl|Q81579|Q81579          172   96  100   32    0     60   3e-08 Nonstructural protein (Fr
trembl|Q81580|Q81580          172   96  100   32    0     60   3e-08 Nonstructural protein (Fr
trembl|Q81582|Q81582          172   96  100   32    0     60   3e-08 Nonstructural protein (Fr
trembl|Q81584|Q81584          172   96  100   32    0     60   3e-08 Nonstructural protein (Fr
trembl|Q81574|Q81574          172   96  100   32    0     60   3e-08 Nonstructural protein (Fr
trembl|Q81578|Q81578          172   96  100   32    0     60   3e-08 Nonstructural protein (Fr
trembl|Q81581|Q81581          172   96  100   32    0     60   3e-08 Nonstructural protein (Fr
trembl|Q81575|Q81575          172  100  100   32    0     58   7e-08 Nonstructural protein (Fr
trembl|Q81583|Q81583          172  100  100   32    0     58   7e-08 Nonstructural protein (Fr
trembl|O39899|O39899           70   53   68   32    0     58   1e-07 Non-structural protein 4a
trembl|Q81577|Q81577          172   93   96   32    0     57   2e-07 Nonstructural protein (Fr
trembl|Q81586|Q81586          256   46   60   41    0     54   1e-06 NS4 protein (Fragment).  
trembl|Q05154|Q05154          205   47   60   38    0     49   4e-05 NS4 (Fragment).          
trembl|P87842|P87842           44   96  100   27    0     49   5e-05 NS4 protein (Fragment).  
trembl|P87845|P87845           44   96  100   27    0     49   5e-05 NS4 protein (Fragment).  
trembl|P87843|P87843           44   96  100   27    0     49   5e-05 NS4 protein (Fragment).  
trembl|P87875|P87875           44   96   96   27    0     49   5e-05 NS4 protein (Fragment).  
trembl|P90405|P90405           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90411|P90411           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90427|P90427           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90417|P90417           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90410|P90410           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90431|P90431           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90426|P90426           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90423|P90423           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90412|P90412           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90429|P90429           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90407|P90407           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90420|P90420           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90418|P90418           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90414|P90414           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90416|P90416           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90428|P90428           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90413|P90413           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90424|P90424           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90430|P90430           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90406|P90406           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90422|P90422           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90425|P90425           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90421|P90421           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90415|P90415           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90404|P90404           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90409|P90409           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90419|P90419           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|P90408|P90408           44   96   96   27    0     49   6e-05 NS4 protein (Fragment).  
trembl|O11845|O11845           41   96   96   27    0     48   7e-05 NS4 protein (Fragment).  
trembl|P87872|P87872           44   96   96   27    0     48   8e-05 NS4 protein (Fragment).  
trembl|P87871|P87871           44   96   96   27    0     48   8e-05 NS4 protein (Fragment).  
trembl|P87870|P87870           44   96   96   27    0     48   8e-05 NS4 protein (Fragment).  
trembl|P87867|P87867           44   92   96   27    0     48   8e-05 NS4 protein (Fragment).  
trembl|P87864|P87864           44   92   96   27    0     48   8e-05 NS4 protein (Fragment).  
trembl|P87849|P87849           44   92   96   27    0     48   8e-05 NS4 protein (Fragment).  
trembl|P87876|P87876           44   92   92   27    0     48   1e-04 NS4 protein (Fragment).  
trembl|P87877|P87877           44   92   92   27    0     47   2e-04 NS4 protein (Fragment).  
trembl|P87879|P87879           44   92   92   27    0     47   2e-04 NS4 protein (Fragment).  
trembl|P87880|P87880           44   96   96   26    0     47   2e-04 NS4 protein (Fragment).  
trembl|P87884|P87884           44   92   96   27    0     47   2e-04 NS4 protein (Fragment).  
trembl|P87844|P87844           44   92   96   27    0     47   2e-04 NS4 protein (Fragment).  
trembl|P87874|P87874           44   92   92   27    0     47   2e-04 NS4 protein (Fragment).  
trembl|P90366|P90366           44   92   96   27    0     47   2e-04 NS4 protein (Fragment).  
trembl|P90367|P90367           44   92   96   27    0     47   2e-04 NS4 protein (Fragment).  
trembl|P87857|P87857           44   88   88   27    0     47   2e-04 NS4 protein (Fragment).  
trembl|P87848|P87848           44   88   92   27    0     47   3e-04 NS4 protein (Fragment).  
trembl|P87865|P87865           44   88   92   27    0     46   4e-04 NS4 protein (Fragment).  
trembl|P87881|P87881           44   92   92   27    0     46   4e-04 NS4 protein (Fragment).  
trembl|P87883|P87883           44   92   92   27    0     46   4e-04 NS4 protein (Fragment).  
trembl|P87854|P87854           44   88   88   27    0     46   5e-04 NS4 protein (Fragment).  
trembl|Q9WM98|Q9WM98         2842   32   53   85    4     45   7e-04 Genome polyprotein.      
trembl|P87873|P87873           44   88   88   27    0     45   7e-04 NS4 protein (Fragment).  
trembl|O36180|O36180         2842   32   53   85    4     45   7e-04 Genome polyprotein.      
trembl|Q81588|Q81588          475   47   61   36    0     45   7e-04 NS3-4 protein (Fragment).
trembl|P87863|P87863           44   88   88   27    0     45   8e-04 NS4 protein (Fragment).  
trembl|Q9WBT6|Q9WBT6         2942   36   51   75    4     45   8e-04 Genome polyprotein.      
trembl|O89252|O89252         2842   31   53   85    4     43   0.002 Genome polyprotein.      
trembl|O93074|O93074         2873   31   53   85    4     43   0.002 Genome polyprotein.      
trembl|O93075|O93075         2873   31   53   85    4     43   0.002 Genome polyprotein.      
trembl|O36179|O36179         2854   31   53   85    4     43   0.002 Genome polyprotein.      
trembl|O93070|O93070         2873   31   53   85    4     43   0.002 Genome polyprotein.      
trembl|O39980|O39980         2842   31   53   85    4     43   0.002 Genome polyprotein.      
trembl|O93073|O93073         2873   31   53   85    4     43   0.002 Genome polyprotein.      
trembl|O39981|O39981         2842   31   53   85    4     43   0.002 Genome polyprotein.      
trembl|O36176|O36176         2842   31   53   85    4     43   0.002 Genome polyprotein.      
trembl|O93069|O93069         2873   31   53   85    4     43   0.002 Genome polyprotein.      
trembl|O36178|O36178         2842   31   53   85    4     43   0.002 Genome polyprotein.      
trembl|Q9DXH4|Q9DXH4         2842   31   53   85    4     43   0.002 Genome polyprotein.      
trembl|Q96899|Q96899         2843   31   53   85    4     43   0.002 Structural and non struct
trembl|O93072|O93072         2873   30   53   85    4     43   0.002 Polyprorein (Genome polyp
trembl|O89251|O89251         2843   31   52   85    4     43   0.003 Genome polyprotein.      
trembl|Q9WMB1|Q9WMB1         2842   31   53   85    4     43   0.003 Genome polyprotein.      
trembl|O36196|O36196         1435   31   53   85    4     43   0.004 Genome polyprotein (Fragm
trembl|O36194|O36194         2873   31   53   85    4     43   0.004 Genome polyprotein.      
trembl|O36181|O36181         2842   31   53   85    4     43   0.004 Genome polyprotein.      
trembl|O93197|O93197         2842   30   53   85    4     43   0.004 Genome polyprotein.      
trembl|Q69433|Q69433         2910   30   53   85    4     43   0.004 Genome polyprotein.      
trembl|Q9WGY8|Q9WGY8         2910   30   53   85    4     43   0.004 Genome polyprotein.      
trembl|O09803|O09803         2933   30   53   85    4     43   0.004 Genome polyprotein.      
trembl|O90481|O90481         2873   30   53   85    4     43   0.004 Genome polyprotein.      
trembl|Q9WDH1|Q9WDH1         2842   30   53   85    4     43   0.004 Genome polyprotein.      
trembl|P89967|P89967         2873   30   53   85    4     43   0.004 RNA for polyprotein (Geno
trembl|O36177|O36177         2842   30   53   85    4     43   0.004 Genome polyprotein.      
trembl|Q80PW6|Q80PW6         2842   30   53   85    4     43   0.004 Polyprotein.             
trembl|O93114|O93114         2873   30   53   85    4     43   0.004 Genome polyprotein.      
trembl|O93071|O93071         2873   30   53   85    4     43   0.004 Genome polyprotein.      
trembl|O09804|O09804         2842   30   53   85    4     43   0.004 Genome polyprotein.      
trembl|O36452|O36452         2842   30   53   85    4     43   0.004 Genome polyprotein.      
trembl|P89968|P89968         2870   30   53   85    4     42   0.006 Polyprotein HGVC964 (Geno
trembl|Q69431|Q69431         2873   30   52   85    4     42   0.007 Genome polyprotein.      
trembl|O56074|O56074         3005   29   50   89    9     40   0.022 Genome polyprotein.      
trembl|Q96901|Q96901         2842   29   52   85    4     40   0.034 Genome polyprotein.      
trembl|O41920|O41920          825   27   51   69    3     36    0.37 Nonstructural polyprotein
trembl|O41921|O41921          834   27   51   69    3     36    0.37 Nonstructural polyprotein
trembl|O41923|O41923          833   27   51   69    3     36    0.37 Nonstructural polyprotein
trembl|O41922|O41922          833   28   50   68    3     36    0.47 Nonstructural polyprotein
trembl|O41915|O41915          834   27   51   69    3     36    0.53 Nonstructural polyprotein
trembl|O41917|O41917          833   27   51   69    3     36    0.53 Nonstructural polyprotein
trembl|O41916|O41916          833   27   51   69    3     36    0.53 Nonstructural polyprotein
trembl|P87868|P87868           44   92   92   27    0     35    0.94 NS4 protein (Fragment).  
---
--- PSI-BLAST ALIGNMENT 


MAXHOM alignment header

--- ------------------------------------------------------------
--- MAXHOM multiple sequence alignment
--- ------------------------------------------------------------
--- 
--- MAXHOM ALIGNMENT HEADER: ABBREVIATIONS FOR SUMMARY
--- ID           : identifier of aligned (homologous) protein
--- STRID        : PDB identifier (only for known structures)
--- IDE          : percentage of pairwise sequence identity
--- WSIM         : percentage of weighted similarity
--- LALI         : number of residues aligned
--- NGAP         : number of insertions and deletions (indels)
--- LGAP         : number of residues in all indels
--- LSEQ2        : length of aligned sequence
--- ACCNUM       : SwissProt accession number
--- OMIM         : OMIM (Online Mendelian Inheritance in Man) ID
--- NAME         : one-line description of aligned protein
--- 
--- MAXHOM ALIGNMENT HEADER: SUMMARY
ID         STRID  IDE WSIM LALI NGAP LGAP LSEQ2 ACCNUM NAME                     
polg_hcvbk 1NS3    98  100  261    0    0  3010 P26663 (P70) (RNA-DIRECTED RNA P
polg_hcvja         98  100  261    0    0  3010 P26662 (P70) (RNA-DIRECTED RNA P
polg_hcvjt         97   99  261    0    0  3010 Q00269 (P70) (RNA-DIRECTED RNA P
polg_hcvtw         96   98  261    0    0  3010 P29846 (P70) (RNA-DIRECTED RNA P
polg_hcv1          87   94  261    0    0  3011 P26664 (P70) (RNA-DIRECTED RNA P
polg_hcvh  1A1V    84   92  261    0    0  3011 P27958 (P70) (RNA-DIRECTED RNA P
polg_hcvj6         74   87  261    0    0  3033 P26660 (P70) (RNA-DIRECTED RNA P
polg_hcvj8         73   87  261    0    0  3033 P26661 (P70) (RNA-DIRECTED RNA P
--- 
--- MAXHOM ALIGNMENT: IN MSF FORMAT

--- 
--- Version of database searched for alignment:
--- SWISS-PROT release 41 (02/2003) with 122 564 proteins
--- 

MAXHOM alignment

TOP - BOTTOM - MaxHom - MView
Identities computed with respect to: (1) predict_h2920
Colored by: consensus/70% and property

                   1 [        .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .] 261
1 predict_h2920      ASHLPYIEQGMQLAEQFKQKAIGLLQTATKQAEAAAPVVESKWRTLEAFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQHTLLFNILGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPC    
2 polg_hcvbk         ASHLPYIEQGMQLAEQFKQKALGLLQTATKQAEAAAPVVESKWRALETFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQSTLLFNILGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPC    
3 polg_hcvja         ASHLPYIEQGMQLAEQFKQKALGLLQTATKQAEAAAPVVESKWRALEVFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQNTLLFNILGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPC    
4 polg_hcvjt         ASHLPYIEQGMQLAEQFKQKALGLLQTATKQAEAAAPVVESRWRALEAFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQNTLLFNILGGWVAAQLAPPSAASAFVGAGIAGAAIGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEAPSAEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPC    
5 polg_hcvtw         ASHLPYIEQGMQLAEQFKQKALGLLQTATKQAEAAAPVVESKWRTLEAFWANDMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQSTLLFNILGGWVAAQLAPPGAASAFVGAGIAGAAVGSIGLGKVLVDMVAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVDPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSGLTITQLLRRLHQWINEDCSTPC    
6 polg_hcv1          SQHLPYIEQGMMLAEQFKQKALGLLQTASRQAEVIAPAVQTNWQKLETFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTAAVTSPLTTSQTLLFNILGGWVAAQLAAPGAATAFVGAGLAGAAIGSVGLGKVLIDILAGYGAGVAGALVAFKIMSGEVPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTAILSSLTVTQLLRRLHQWISSECTTPC    
7 polg_hcvh          SQHLPYIEQGMMLAEQFKQKALGLLQTASRHAEVITPAVQTNWQKLEVFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTAAVTSPLTTGQTLLFNILGGWVAAQLAAPGAATAFVGAGLAGAALDSVGLGKVLVDILAGYGAGVAGALVAFKIMSGEVPSTEDLVNLLPAILSPGALAVGVVFASILRRRVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTAILSSLTVTQLLRRLHQWISSECTTPC    
8 polg_hcvj6         ASRAALIEEGQRIAEMLKSKIQGLLQQASKQAQDIQPAVQASWPKVEQFWAKHMWNFISGIQYLAGLSTLPGNPAVASMMAFSAALTSPLSTSTTILLNILGGWLASQIAPPAGATGFVVSGLVGAAVGSIGLGKVLVDILAGYGAGISGALVAFKIMSGEKPSMEDVVNLLPGILSPGALVVGVICAAILRRHVGPGEGAVQWMNRLIAFASRGNHVAPTHYVTESDASQRVTQLLGSLTITSLLRRLHNWITEDCPIPC    
9 polg_hcvj8         ASKAALIEEGQRMAEMLKSKIQGLLQQATRQAQDIQPAIQSSWPKLEQFWAKHMWNFISGIQYLAGLSTLPGNPAVASMMAFSAALTSPLPTSTTILLNIMGGWLASQIAPPAGATGFVVSGLVGAAVGSIGLGKILVDVLAGYGAGISGALVAFKIMSGEKPTVEDVVNLLPAILSPGALVVGVICAAILRRHVGQGEGAVQWMNRLIAFASRGNHVAPTHYVVESDASQRVTQVLSSLTITSLLRRLHAWITEDCPVPC    
  consensus/100%     up+hshIEpG..hAE.hKpKh.GLLQpAo+pApshtPslpspW.tlE.FWApcMWNFISGIQYLAGLSTLPGNPAlAShMAFoAulTSPLsTtpTlLhNIhGGWlAuQlAsPuuAouFVsuGlsGAAlsSlGLGKlLlDhlAGYGAGluGALVAFKlMSGEhPohEDlVNLLPuILSPGALsVGVlhAuILRR+Vs.GEGAVQWMNRLIAFASRGNHVuPTHYVsESDAutRVTtlLuuLTlTpLL+RLHtWIsp-CshPC    
  consensus/90%      up+hshIEpG..hAE.hKpKh.GLLQpAo+pApshtPslpspW.tlE.FWApcMWNFISGIQYLAGLSTLPGNPAlAShMAFoAulTSPLsTtpTlLhNIhGGWlAuQlAsPuuAouFVsuGlsGAAlsSlGLGKlLlDhlAGYGAGluGALVAFKlMSGEhPohEDlVNLLPuILSPGALsVGVlhAuILRR+Vs.GEGAVQWMNRLIAFASRGNHVuPTHYVsESDAutRVTtlLuuLTlTpLL+RLHtWIsp-CshPC    
  consensus/80%      up+hshIEpG..lAE.hKpKh.GLLQpAo+QApshtPsVpopW.tLE.FWAKHMWNFISGIQYLAGLSTLPGNPAlAShMAFoAulTSPLoTppTlLhNILGGWlAuQlAsPuuAouFVsuGlsGAAlGSlGLGKVLVDlLAGYGAGluGALVAFKlMSGEhPSsEDlVNLLPAILSPGALVVGVlCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVuPTHYVsESDAutRVTtlLSSLTlTpLL+RLHpWIsp-CssPC    
  consensus/70%      ASHLPYIEQGMpLAEQFKQKAlGLLQTAo+QAEshsPsVpopWptLEsFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTAulTSPLTTppTLLFNILGGWVAAQLAPPuAAoAFVGAGlAGAAlGSIGLGKVLVDILAGYGAGVAGALVAFKlMSGEhPSsEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLL+RLHQWIsEDCoTPC    


CYSPRED prediction(P Fariselli,P Riccobelli & R Casadio)

TOP - BOTTOM - CYSPRED
PREDICTION OF BONDING STATE OF CYSTEINES
Network N. 1  Conservation+ Entropy
N.cys   Prob.SS         Prob.SH
187     0.010717        0.989284
257     0.585837        0.414170
261     0.922998        0.077001
###################
Network N. 2  Conservation+ Entropy + Charges
N.cys   Prob.SS         Prob.SH
187     0.009745        0.929050
257     0.631593        0.212123
261     0.896572        0.092042
###################
Network N. 3  Charge
N.cys   Prob.SS         Prob.SH
187     0.174784        0.825220
257     0.143768        0.856233
###################
Network N. 4   Conservation+ Entropy+Hydrophobicity
N.cys   Prob.SS         Prob.SH
187     0.004093        0.995907
257     0.719437        0.280565
261     0.915167        0.084837
###################
Network N. 5   Conservation+ Entropy + Charges + Hydrophobicity
N.cys   Prob.SS         Prob.SH
187     0.011885        0.988115
257     0.602791        0.397206
261     0.916243        0.083753
###################
JURY AMONG THE DIFFERENT NETWORKS
        Prob.SS Prob.SH
N.cys   BONDED  NON-BONDED      DISULFIDE
187     0.042   0.946           NO 
257     0.537   0.432           YES
261     0.730   0.068           YES
#==============================================#

PHD information about accuracy

****************************************************************************
*                                                                          *
*    PHD: Profile fed neural network systems from HeiDelberg               *
*    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~               *
*                                                                          *
*    Prediction of:                                                        *
*       secondary structure,                       by PHDsec               *
*       solvent accessibility,                     by PHDacc               *
*       and helical transmembrane regions,         by PHDhtm               *
*                                                                          *
*    Author:                                                               *
*       Burkhard Rost                                                      *
*       EMBL, 69012 Heidelberg, Germany                                    *
*       Internet: Rost@EMBL-Heidelberg.DE                                  *
*                                                                          *
*    All rights reserved.                                                  *
*                                                                          *
****************************************************************************
*                                                                          *
*    The network systems are described in:                                 *
*                                                                          *
*    PHDsec:    B Rost & C Sander: JMB, 1993, 232, 584-599.                *
*               B Rost & C Sander: Proteins, 1994, 19, 55-72.              *
*    PHDacc:    B Rost & C Sander: Proteins, 1994, 20, 216-226.            *
*    PHDhtm:    B Rost et al.:     Prot. Science, 1995, 4, 521-533.        *
*                                                                          *
****************************************************************************

PHD predictions

TOP - BOTTOM - PHD

PHD predictions for predict_h29244

Contents:


 
 



SYNOPSIS of prediction




HEADER information


 
 



 
 

BODY with predictions

PHD results (brief)
....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....1 AA ASHLPYIEQGMQLAEQFKQKAIGLLQTATKQAEAAAPVVESKWRTLEAFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQHTLLFNI PHD_htm MMMMMMMMMMM MMMMMMMMMMMMMMMMMMMMMMMMMMMMRel_htm **************************************************** ******* * PiMohtm oooooooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTTooooooooo ....,....11...,....12...,....13...,....14...,....15...,....16...,....17...,....18...,....19...,....20 AA LGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEG PHD_htm MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM MMMMMMMMMMMMMMMMMMM Rel_htm * ***************** ************ *********** ************ ***** PiMohtm oooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiii ....,....22...,....23...,....24...,....25...,....26...,....27...,....28 AA AVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPC PHD_htm Rel_htm ********************************** **************** PiMohtm iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
 

PHD results (normal)

 ....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....1 AA ASHLPYIEQGMQLAEQFKQKAIGLLQTATKQAEAAAPVVESKWRTLEAFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQHTLLFNI PHD_htm MMMMMMMMMMM MMMMMMMMMMMMMMMMMMMMMMMMMMMMRel_htm 9999999999999999999999999999999999999999999999998877640135666654310111121456777777766432223211245667SUB_htm NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN........................MMMMMMM................M PHDrhtm MMMMMMMMMMMMMMMMMM MMMMMMMMMMMMMMMMMM PiMohtm oooooooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTTooooooooo ....,....11...,....12...,....13...,....14...,....15...,....16...,....17...,....18...,....19...,....20 AA LGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEG PHD_htm MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM MMMMMMMMMMMMMMMMMMM Rel_htm 7666654333345566777777777777777776666667777777777776642145678888888887512466778888888777640455678899SUB_htm M...............MMMMMMMMMMMMMMMMM......MMMMMMMMMMMM........NNNNNNNNNNN......MMMMMMMMMMMM.......NNNNN PHDrhtm MMMMMMMMMMMMMMMMMMM MMMMMMMMMMMMMMMMMM MMMMMMMMMMMMMMMMMM PiMohtm oooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiii ....,....22...,....23...,....24...,....25...,....26...,....27...,....28 AA AVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPC PHD_htm Rel_htm 9999999877789999999999999999999987642100233467889999999999999SUB_htm NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN...........NNNNNNNNNNNNNNNN PHDrhtm PiMohtm iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
 


Ambivalent Sequence Predictor(Malin Young, Kent Kirshenbaum, Stefan Highsmith)

TOP - BOTTOM - A conformational switch prediction program
Ambivalent Sequence Predictor (ASP v1.0) mmy


PROF predictions

TOP - BOTTOM - PROF

Bottom   -   Summary   -   Details   -  PredictProtein

PROF predictions for query 

Contents:

 
 




SYNOPSIS of prediction for query 





HEADER information


 
 



 


BODY with predictions for query 

PROF results (normal)
....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10.1.,....11.1.,....12.1.,....13.1.,....14.1.,....15.1.,....16.1.,....17.1.,....18.1.,....19.1.,....20.1.,....21.1.,....22.1.,....23.1.,....24.1.,....25.1.,....26 AA ASHLPYIEQGMQLAEQFKQKAIGLLQTATKQAEAAAPVVESKWRTLEAFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQHTLLFNILGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPCOBS_sec PROF_sec HHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHH HHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHH HHHHHHHHH HHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHHHH HHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHH Rel_sec 987642688898888888877635767656555227714435888888888988878878885623234787788887787663103777741577886654577722378100003467446667764210223467655201024888876533226888997888877654217641347889999987425862226678988998730457556754467100777888888663478898888755530156889SUB_sec LLLL..HHHHHHHHHHHHHHHH.HHHHHHHHHH..LL....HHHHHHHHHHHHHHHHHHHHHHH.....LLLLHHHHHHHHHH....LLLL..HHHHHHHH.HHHH...LL.......HH..HHHHHH........HHHHH......HHHHHHH....LLLLLLHHHHHHHHH...LL....HHHHHHHHHH..LLL...HHHHHHHHHHH...LLLLLLL..LL...HHHHHHHHHHH..HHHHHHHHHHHH...LLLLL O_3_acc bbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbP_3_acc eee e beeb ebbeebee b ebbeebee beebeeebee be beebbb bbb bbbbbbbbbbb b bbbbbbbbbbbb b ebeee bbbbbbbbbbbb eeeeb bbbbbbbbbbbbbb eb ebbb bbbbbbbbbbbbbbbb bbeeee e b ebbe bbb ebbbbbbbbbbbb e eee bb bbbbbbbbbe eeeb e eee ee b ebbeeb b ebbe b e eee eeeeRel_acc 832222233905176333546331442315335401222222364724052409035646923121000100102595657453102121221223773667616922003240123655776677864300023096368562355665936873022130152629353623110003256999996493322122204145941862421311032031122332116393528322052458558093034135015SUB_acc e........b.e.be...eib...be...e..ee.........eib.e.b.i.b..bbbbb..............bbbbbbbb.............bb.bbbb.bb......e....bbbbbbbbbbbb.......bb.bbbb..bbbbbb.bbb........i.e.b.e.b.........bbbbbbbbbb.........b.ibbb.bb.b...................e.b.e.b....b.ebbeib.e...e..e..e
 

PROF results (detail)

 ....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10.1.,....11.1.,....12.1.,....13.1.,....14.1.,....15.1.,....16.1.,....17.1.,....18.1.,....19.1.,....20.1.,....21.1.,....22.1.,....23.1.,....24.1.,....25.1.,....26 AA ASHLPYIEQGMQLAEQFKQKAIGLLQTATKQAEAAAPVVESKWRTLEAFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTASITSPLTTQHTLLFNILGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKVLVDILAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLIAFASRGNHVSPTHYVPESDAAARVTQILSSLTITQLLKRLHQWINEDCSTPCpH_sec .............. ............. .. .. ... .. .. . .... ....... ....... ....... ........ 1.0 pH_sec ................ .... . ..................... .......... ...... ... . ..... . ..... ......... .......... .......... ........... ......... 0.9 pH_sec ................ .......... .. ....................... .......... ............. ... ...... ..... ....... .......... ........... ........... ........... ............. 0.8 pH_sec ............................. ........................... ........... ............... ............. ........ .......... ........... ............. . ............ .......................... 0.7 pH_sec ............................. ............................ ............ ................ . ............... ......... ........... ........... .............. ............... . ............................ 0.6 pH_sec ............................. ............................ ............. ................ .................... ....................... ........... .............. ............... ............................... 0.5 pH_sec .............................. .............................. ............. ................. .............................................. ............ ............... ................ ............................... 0.4 pH_sec ............................... ................................ .............. .................. ............................................... ............ ................ .................. . ................................ 0.3 pH_sec .................................................................. .............. ..................... ................................................ ............................... ................... .... .................................. 0.2 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- pE_sec 1.0 pE_sec 0.9 pE_sec 0.8 pE_sec 0.7 pE_sec 0.6 pE_sec 0.5 pE_sec 0.4 pE_sec . .. . . 0.3 pE_sec . .... ...... .. ... ... 0.2 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- pL_sec .. . ..... . . . 1.0 pL_sec .... .. .... .... .. ...... .. .. . .. . .... 0.9 pL_sec ..... .. .... .... .. ...... ... ... ........ .. ..... 0.8 pL_sec ..... ... ........ ...... ... . ...... ... .... ............ ..... 0.7 pL_sec ..... ... ........ ...... ..... .. . ....... ..... .... ............. . ..... 0.6 pL_sec ..... .... ........ ....... ..... . ... ... ....... ..... .... ................ ....... 0.5 pL_sec ...... . ..... . ......... ......... .......... ...... ..... ....... ...... ....... ................ . ....... 0.4 pL_sec ...... .. . . ......... ......... ........... .. ........... .. ........ ...... .......... ........ ........ ................. .. . ......... 0.3 pL_sec ....... ..... ............... . . ........... . .............. ...... ................... ........... ......... ............. ............. ........... ................... .... ............ 0.2 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- OBS_acc 100% OBS_acc 81% OBS_acc 64% OBS_acc 49% OBS_acc 36% OBS_acc 25% OBS_acc 16% OBS_acc 9% OBS_acc 4% --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROF_acc .. . .. . .. . .. 100% PROF_acc ... . . ... .. . ... . . .. . .. 81% PROF_acc ... . . . . .. . . . ... . ... . . . . ... .. . .. .. . .. . .. 64% PROF_acc ... . .. . .. .. . .. .. .. ... .. . .. . ... .... . . .... . . . . . ... . ... . ... .. . .. . . . ... .... 49% PROF_acc ... .. .. . .. ... . .. ... .. ... ... .. .. . . .. . . ... . . .... . . .. . .... .... . .. . .. ..... . ..... . .. ........ .. .. . . .. . ... .... 36% PROF_acc ... .. .. . .. ... .. .. ... .. ... ... .. .. . . .. .. . . ..... . .... . . .. . ......... .. .. . ... ..... . ..... .... ........ .. .. . .. .. ...... .... 25% PROF_acc ...... .. .. .. ... .. .. ... .. ... ... .. .. . . .. .. .. .. ..... ....... . .. .. . . ......... .. .. .. ......... . ..... .............. .. .. . .. .. ............ 16% PROF_acc ...... .. .. .. ... .. .. ... .. ... ...... .. . . .. ... .. ........ ....... . .. .. . . ......... .. .. . .. ......... . .................... .. .... .. .. ............ 9% PROF_acc ...... .. .. .. ... .. .. ... .. ... ...... .. . . .. ... .. ........ ....... . .. .. . . ......... .. .. . .. ......... . .................... .. .... .. .. ............ 4% ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
 



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GLOBE prediction of globularity

--- 
--- GLOBE: prediction of protein globularity
--- 
--- nexp =   114    (number of predicted exposed residues)
--- nfit =   112    (number of expected exposed residues
--- diff =     2.00 (difference nexp-nfit)
--- =====> your protein appears as compact, as a globular domain
--- 
--- 
--- GLOBE: further explanations preliminaryily in:
---        http://www.columbia.edu/~rost/Papers/98globe.html
--- 
--- END of GLOBE

END of results for file predict_h29244
 
 



 
 
 
 

Quotes for methods

  1. PredictProtein: PredicProtein: B Rost (1996) Methods in Enzymology, 266:525-539
  2. PROSITE: A Bairoch, P Bucher & K Hofmann (1997) Nucleic Acids Research, 25:217-221
  3. SEG: J C Wootton & S Federhen (1996) Methods in Enzymology, 266:554-571
  4. ProDom: ELL Sonnhammer & D Kahn (1994) Protein Science, 3:482-492
  5. MaxHom: MaxHom: C Sander R Schneider (1991) Proteins, 9:56-68
  6. MView: MView: N P Brown, C Leroy & C Sander (1998) Bioinformatics, 14:380-381
  7. PHD: B Rost (1996) Methods in Enzymology, 266:525-539
  8. PHDhtm: B Rost, P Fariselli & R Casadio (1996) Protein Science, 7:1704-1718
  9. PROF: B Rost (2000) in submission
  10. PROFsec: B Rost (2000) in submission
  11. PROFacc: B Rost (2000) in submission
  12. GLOBE: B Rost (1998) unpublished
  13. CYSPRED: Fariselli P, Riccobelli P & Casadio R (1999) PROTEINS 36:340-346
  14. A conformational switch prediction program: Young et al. Protein Science(1999) 8:1752-64.

 
 


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