RPS-BLAST 2.2.6 [Apr-09-2003]
Query= local sequence:
(261 letters)
Database: cdd.v1.65
18,039 PSSMs; 5,506,404 total columns
| PSSMs producing significant alignments: |
Score
(bits) |
E
value |
| |
| gnl|CDD|16868 |
pfam01001, HCV_NS4b, Hepatitis C virus non-structural protein ... |
178 |
1e-45 |
gnl|CDD|16868, pfam01001, HCV_NS4b, Hepatitis C virus non-structural protein NS4b. No precise function has been assigned to NS4b. However, it is known that NS4b interacts with NS4a and NS3 to form a large replicase complex to direct the viral RNA replication.
CD-Length = 192 residues, 100.0% aligned
Score = 178 bits (452), Expect = 1e-45
Query: 17 FKQKAIGLLQTATKQAEAAAPVVESKWRTLEAFWAKHMWNFISGIQYLAGLSTLPGNPAI 76
Sbjct: 1 FAFKALGLLPPAGDQAESATPTLASLDTKFEQFWAKHMWNFRSGIQYLAGLYTLPRNPPL 60
Query: 77 ASLMAFTASITSPLTTQHTLLFNILGGWVAAQLAPPSAASAFVGAGIAGAAVGSIGLGKV 136
Sbjct: 61 AVAASFLAGLTSPLPTHVRLALALLGGWGATQLGTPSGGLAFVGAGFAGAAVGSIWLGRI 120
Query: 137 LVDILAGYGAGVAGALVAFKVMSGEMPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVG 196
Sbjct: 121 LVDVLGGYEAAVSAASLTFKIMSGELPTAEDLWNLVPCLLSPGAGVVGVALAALLRSHK- 179
Query: 197 PGEGAVQWMNRLIA 210
Sbjct: 180 -GEGAVQWMNRLLT 192
|
